Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04683 ATGGAACAAGAAAAGAGCCAGACGATGTACAATCTCTTCGTGAAGCACTTAGACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTACGCAAATTCAATCAAGGATCGTCTCTTCCAACTCACCGGAATCCCAACCCAACACCAACGCCTCGTCACCGGTTGCCGCCACCTCAACGACGACAAATCAACAATATGTTGTTCTCCGGAAGGAGGGAACATGTTCCCATCTGTGCGTCTTCTTCTTCGTCTGAAAGGTGGAAAAGGAGGATTCGGATCTTTGCTTCGTGGAGCGGCGACGAAGGCGGGGCAGAAAAAGACGAACAATTTCGATGCGTGTAGGGATATGAGTGGAAGAAGATTGAGACATGTGAATGCTGAGAAGAGATTGGAGGAATGGAGAGCTGGTGAAGAAGATAGAAAACTTGAGAAGGTTGCTGAGGAGTTTCTGAAGAAACAGATGAAGAAGAATAATGGTAAGGGTAAGAATGGTGATGTTGATGGTGAAGCTATGAAGTATGTTGCTAAATATAGGGAACAATCTGAACGTTGTGTTGCTGAGGTTGCTTTGTCTGTTCAGGATTCTCTCAAGCGTAAATCTTCACCTACATCAGAAGCTTCTCTTCCTAGTGATCCCAAGAAATTGAAGATATGGATGGGGAAGAGAACATTGAATGAAAGTGATGATAGTGATGATTCTGATGAAGATGTTGATAATGATGAGAGGGAAACTGAGAAATCTGTTTTGTTAAATAGTCAGAATGAGTCTGGGTTAATTAAGGCTGACTATAGTTCTGATTCTGTGAATGGTCTAAAGCGGGATGGAGAATCTTCTGGGGTTGGCTCGTGTGAGAGTGGATCTGAAGAAGAGAAGGAAACTGTTGAAGAAGGCAAAGTGGAAACTGTTGGAGGATCCCAGAGTAGTGAAACTATTAAGCAAGAACTGAGTGTTGCTGATGAACCCATGGTAAATGATGAGGTGATGGAGGCTAATTCCATGCCTTATTCAGAGACATTGGAATCTGGAATTAGTGTTCAAGATAATGGCTGTCAGGGTTACAAGGTTGATGGCACTGTTACTCAAGCCTCAAATATTGTGAGCTCTGAAATTGTGCCCAATGACATGGAAATTGATGGTTCTCTTCAGCATAAAACGGCTGTCATGGAAGAAAGCTTGCCAAGCACTAGTGTTCCTGCAAAGGAGGAGCCTctgaattttgatgattttaatTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAATTTGAAGACTGAACTCCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCAAggctttttcttttaaaatcgACTCCCCTGGATAAACTTCCGAAGAAACTGCTAGCAAAGAAATGA 1401 0.424 MEQEKSQTMYNLFVKHLDGKTLTLLFPSPILYANSIKDRLFQLTGIPTQHQRLVTGCRHLNDDKSTICCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWRAGEEDRKLEKVAEEFLKKQMKKNNGKGKNGDVDGEAMKYVAKYREQSERCVAEVALSVQDSLKRKSSPTSEASLPSDPKKLKIWMGKRTLNESDDSDDSDEDVDNDERETEKSVLLNSQNESGLIKADYSSDSVNGLKRDGESSGVGSCESGSEEEKETVEEGKVETVGGSQSSETIKQELSVADEPMVNDEVMEANSMPYSETLESGISVQDNGCQGYKVDGTVTQASNIVSSEIVPNDMEIDGSLQHKTAVMEESLPSTSVPAKEEPLNFDDFNSAAELEVLGLENLKTELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04683 466 Pfam Replication stress response SDE2 C-terminal 396 465 - -
Tsu07g04683 466 ProSiteProfiles Ubiquitin domain profile. 10 89 IPR000626 GO:0005515
Tsu07g04683 466 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 465 - -
Tsu07g04683 466 Gene3D - 2 91 - -
Tsu07g04683 466 MobiDBLite consensus disorder prediction 196 210 - -
Tsu07g04683 466 MobiDBLite consensus disorder prediction 195 313 - -
Tsu07g04683 466 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 155 IPR024974 -
Tsu07g04683 466 PANTHER SPLICING FACTOR SF3A-RELATED 9 465 - -
Tsu07g04683 466 SUPERFAMILY Ubiquitin-like 6 69 IPR029071 -
Tsu07g04683 466 Coils Coil 412 432 - -
Tsu07g04683 466 MobiDBLite consensus disorder prediction 251 265 - -
Tsu07g04683 466 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04683 Tsu-Chr7 51306082 51308793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04683 392 465 C2H2 Transcription Factor Family AT5G06160 44.595 7.00e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04683 K25059 - gmx:100781694 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04683 07 51306082 51308793 Tsu07g04683 07 51306082 51308793 ECH