Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04676 atgccTCGAGAGATAATCACTCTTCAGGTTGGACAATGCGGAAACCAGATCGGTATGGAATTCTGGAAGCAGCTCTGTCTCGAACATGGCATCAGCAAAGACGGCATCCTTGAAGATTTCGCTACTCAGGGAGGAGATAGGAAAGATGTTTTCTTTTATCAAGCTGATGATCAGCATTATATACCGCGTGCTCTATTGATTGACTTGGAGCCGAGAGTTATTAATGGAATTCAAAATAGTGACTACCGGAATCTCTACAATCACGAGAATATCTTTGTCTCTGATCATGGTGGTGGTGCAGGAAACAATTGGGCTAGTGGATACCATCAGGGAAAGAATGttgaagaagatataatggaCATGATTGACAGAGAAGCAGATGGTAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCTGGAGGAACAGGATCAGGTATGGGGTCGTACCTGTTGGAGACTCTGAATGATCGATACAGCAAAAAATTGGTTCAGACATACAGTGTATTTCCTAACCAAATGGAGACAAGTGATGTGGTGGTCCAACCATACAATTCACTTCTGACACTCAAGCGACTGACTCTTAATGCTGATTGTGTTGTGGTTCTCGACAATACCGCACTTAATAGAATTGCTGTTGAACGACTTCATTTATCAAATCCAACATTTGCTCAAACAAATTCATTAGTTTCTACTGTGATGTCTGCCAGCACAACCACTCTTCGTTATCCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGATATACTCCTTTAACAGTGGAACGTCAGGCTAATGTAATTCGTAAGACCACTGTGCTTGATGTCATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCCTCTTATGCAAGGACCAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGACCCAACCCAGGTTCATGAAAGTTTGCAAAGGATACGTGAAAGAAAGCTTGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCCAGGAAATCACCATATGTTCAAACTGCACACAGGGTCAGTGGGCTTATGTTGGCTAGTCATACTAGCATCCGCCACCTTTTCAGTAAATGTCTGAGCCAGTATGATAAGTTGAGAAGGAAACAAGCCTTTTTAGACAACTACCGGAAGTTCCCAATGTTTGCTGATAATGATCTCTCAGAGTTTGATGAATCACGGGAGATAATTGAGAATTTGGTTGATGAATATAAGGCCTGTGAATCCCCAGATTATATCAAATGGGGAATGGAGGATCCGAATAATACGATGACAGGAGAAGGCAATGCTGCAGGATCACTGGATCCAAAATCAGTAAAGCCACAAATCCTAGATTCTAGTAGACGCGCATCTACTAGTAATTATGCCGTGGAAACAAACGGTCGTATATACCCAACCGTCATCATCTTCTATCTACTTGAAAAGAAGACAAAGAAGCATTCCATTCCATATTCGCCGCGCCGGAGCTTCTTCGCCACCATCTCCCTTGCCCCTTTGAAGATGACGACAATACGTAGATTTTGCTGCAACGATCTTCTTCGTTTTACAAATGTCAATCTAGATCATCTCACCGAAACTTTTAACATGTCCTTCTACATGACCTATCTAGCACGATGGCCTGACTATTTCCATGTTGCCGAAGGCCCCGGCAATCGAATTATGGGTTACATTATGGGTAAAGTAGAGGGGCAAGGAGAATCTTGGCATGGTCATGTAACGGCAGTAACTGTCGCTCCAGAGTATCGCAGGCAACAGTTAGCCAAGAAACTAATGAATCTTTTGGAAGACATCAGTGACAATATTGACAAAGCCTACTTTGTTGATCTATTTGTGAGAGCATCAAATACACCAGCCATCAAGATGTATGAAAAGCTTGGCTATGTGATTTATCGACGAGTGCTGCGTTATTATTCTGGAGAAGAAGATGGATTGGATATGAGGAAAGCATTATCTCGTGATGTTGAAAAGAAGTCCATCATCCCTCTTAAAAGGCCTATCACTCCTGATGAATTAGAGTACGACTAA 2127 0.4142 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSDYRNLYNHENIFVSDHGGGAGNNWASGYHQGKNVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKLRRKQAFLDNYRKFPMFADNDLSEFDESREIIENLVDEYKACESPDYIKWGMEDPNNTMTGEGNAAGSLDPKSVKPQILDSSRRASTSNYAVETNGRIYPTVIIFYLLEKKTKKHSIPYSPRRSFFATISLAPLKMTTIRRFCCNDLLRFTNVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNLLEDISDNIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPITPDELEYD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04676 708 Gene3D - 535 695 - -
Tsu07g04676 708 PRINTS Gamma-tubulin signature 116 131 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 341 364 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 251 262 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 366 386 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 193 206 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 286 301 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 423 446 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 PRINTS Gamma-tubulin signature 31 51 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 SUPERFAMILY Tubulin nucleotide-binding domain-like 2 246 IPR036525 -
Tsu07g04676 708 PANTHER TUBULIN GAMMA CHAIN 111 456 - -
Tsu07g04676 708 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Tsu07g04676 708 Gene3D Tubulin/FtsZ, GTPase domain 1 269 IPR036525 -
Tsu07g04676 708 Pfam Acetyltransferase (GNAT) family 573 661 IPR000182 GO:0016407
Tsu07g04676 708 PANTHER TUBULIN GAMMA CHAIN 1 110 - -
Tsu07g04676 708 Pfam Tubulin/FtsZ family, GTPase domain 4 214 IPR003008 GO:0005525
Tsu07g04676 708 Pfam Tubulin C-terminal domain 264 393 IPR018316 -
Tsu07g04676 708 CDD gamma_tubulin 3 438 IPR002454 GO:0000930|GO:0007020|GO:0031122
Tsu07g04676 708 SMART Tubulin_4 48 247 IPR003008 GO:0005525
Tsu07g04676 708 CDD NAT_SF 577 631 - -
Tsu07g04676 708 PANTHER TUBULIN 111 456 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PANTHER TUBULIN 1 110 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 535 684 IPR016181 -
Tsu07g04676 708 Gene3D - 270 383 IPR037103 -
Tsu07g04676 708 Gene3D Helix hairpin bin 384 445 IPR023123 -
Tsu07g04676 708 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 11 31 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 193 213 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 179 192 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 96 107 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 PRINTS Tubulin signature 382 410 IPR000217 GO:0005874|GO:0007017
Tsu07g04676 708 SUPERFAMILY Tubulin C-terminal domain-like 247 446 IPR008280 -
Tsu07g04676 708 SMART Tubulin_C_4 249 395 IPR018316 -
Tsu07g04676 708 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 536 685 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04676 Tsu-Chr7 51254481 51263532 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Tsu07g04676 Tubulin 1.9e-70 CL0566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04676 K10389 - psom:113343798 925.235