Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04648 ATGCCATTTGGTGAATGTGGAGATGTGAAAGAGGATATAAGCAAATGGGGCAATGGTTTTCCAACCACTCTATGCTGTCGAAATGCGCTCACCCTTCTGTCAGATGCCATGGCGACACAAGCCCGTAACAGAACAGGACAAGTGTTCCTTTCTCAAGAACAATGGCAAAGTTGCAACAAATCATTTCATCCACAACAAGGGATGTCAATGTCTTCATGTGGATTTGATAACATTTACTTTGGTAGCTCCCAATGCTCCAGCTTGGCTTTGCTAGATGTTCAGGGCTTGCAAGCGTACGCAGATGCATTGAACAAATGCAGCCACTTTGATCAGTCCTTCGATGTGTCGTGTGTGGAGTGTACAAGTGCAATATTGAACCTGAGAGAGgatttatattatacaaaactTAAGGACAACAATGACACTGAGAGAGCCATATGTGGTGTAGCAGCTCTTGTTTCTGTTGCAGCTGAACAAAAAGATGACCCTTTCCTCGCAGACAAATTCTTGCGTTGCTTGCCACCTCCAGCATTAAATATTAAGAAATCATCACAGAAGAAACTTGTGTTGGGAGTACTGGTGGTAGCTATCGTAGCATTATTGGTGATTGTTTTTCTGGTAAAATGTGTAACAAAAAAGAAGCCTATTAAGAAGAAGCATGTTCAATTGAAACAGATAACTACTTGGTCTGGATTGTACTGGTTTacaaaaactgaaattgaaAATGCAATGAATTTTGAAGATGAAAAGATAAACCTTGGACGTGGGAGTGCGGGTGAGGTATATAGAGGCGTTTTACCTAGTGGTCAAGTTGTGGCAATCAAGCATTTGATAAAGAATAGCACCTCTAGTTCTGATTCTTTCACCCGAGAACTCGCTGGTCTTTCGAGGCTTCGTCACCCAAATCTTGTTTGCTTGTTTGGTTGTTGTATGGAAGATGGTGAGAGATATTTAGTTTACGAATTTTGCGCCAATGGAAATCTTGCTCAACATCTCTTGAGAAGAGACAGCCATTTGACATGGGAAACAAGAGTGAGGATTTTGAAAGAATGTTCATTTGCACTTAAGTACCTTCATCAACATATCGAGGGTTGTGTTGTCCATAGAGATATCAAGCTTACAAACATTCTTTTGACTGAGAAATACGATGCCAAACTGTCGGATTTTGGTTTGTCGAGGATGATGGGGATGGAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATAGGTTATATGGATCCGGAGTACATGAGCAATGCAAAGCTAACATGTGCGAGTGATGTATATAGTTTCGGAATTGTTGCTTTACAAATTCTGTCTGGACAGAAAGTCATAGAATTGGATCTTGATGCTAGAGATCAACTCACCAGAAAGGCAAGAGATGTGAGTTTGGGAAAGCGTCCATTGTCGGATTTTGTAGACTCACGACTAAAGGGACAGGTCGATAaggatgattttggtgacaTTTTACAGATTGCAGTACTTTGCGTTGCCAAATCAAGCACAGGACGGCCAACAATTGGGGTTGTTTTTGACGAATTGGACAAAGTCTACGGGAACATAGAGGCGCGCAAtAAGGCAACCCcgtcaacaacaacatcaacatctaGCTCTAATTGA 1623 0.3986 MPFGECGDVKEDISKWGNGFPTTLCCRNALTLLSDAMATQARNRTGQVFLSQEQWQSCNKSFHPQQGMSMSSCGFDNIYFGSSQCSSLALLDVQGLQAYADALNKCSHFDQSFDVSCVECTSAILNLREDLYYTKLKDNNDTERAICGVAALVSVAAEQKDDPFLADKFLRCLPPPALNIKKSSQKKLVLGVLVVAIVALLVIVFLVKCVTKKKPIKKKHVQLKQITTWSGLYWFTKTEIENAMNFEDEKINLGRGSAGEVYRGVLPSGQVVAIKHLIKNSTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILKECSFALKYLHQHIEGCVVHRDIKLTNILLTEKYDAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSLGKRPLSDFVDSRLKGQVDKDDFGDILQIAVLCVAKSSTGRPTIGVVFDELDKVYGNIEARNKATPSTTTSTSSSN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04648 540 Gene3D Phosphorylase Kinase; domain 1 217 322 - -
Tsu07g04648 540 Pfam SPARK 8 141 IPR043891 -
Tsu07g04648 540 SUPERFAMILY Protein kinase-like (PK-like) 229 516 IPR011009 -
Tsu07g04648 540 PANTHER OS01G0253100 PROTEIN 4 525 IPR045271 GO:0004714|GO:0006468
Tsu07g04648 540 ProSiteProfiles Protein kinase domain profile. 247 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04648 540 Pfam Protein kinase domain 252 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04648 540 Gene3D Transferase(Phosphotransferase) domain 1 323 537 - -
Tsu07g04648 540 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 4 525 - -
Tsu07g04648 540 SMART serkin_6 246 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04648 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04648 Tsu-Chr7 51068453 51070965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04648 181 519 Receptor kinase-like Gene Family AT5G48740 35.493 6.97e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Tsu07g04648 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04648 - - mtr:MTR_7g116650 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04648 07 51068453 51070965 Tsu08g01027 08 11294468 11297841 PCT