Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04645 ATGGCGGCGGCGGCGACGAAAAGAGATGAATCATCGGAATTGAAGGAGCGGTTACGGAAACTCGTTAAAAGTATCGTTGAATCTGATGACTATACTTTGCAAATCGCCGATGATGCAATCGCTACTCTTTCTTCTCTCAAAGATTTCAAGTCTCGtagtattaataataataatggaacAAAAAACTCTTTCTCTTCTAAATTGGACCAATTTACCCTTCCTCCTGAATTTCGTTGCCCTATTTCCACTCAATTGATGATCGATCCTGTTATCTTGTCCACCGGTCAAACTTATGATCGGCCGTTTATTCAGAGGTGGTTGAATGAAGGCAATAGGACATGCCCTCAAACCCAGCAAGTTCTATCTCATACAATTCTTACTCCTAATTACTTGGTCCGAGACATGATTGCGCAGTGGTGTAAAGAGCGTGGACTTGAGCTGCCAAAGCCTAATACTCGGGACACGGATGAAGTTGTGACTGATGCAGACAAAGACCGTTTAGATGCGTTGCTTCATAAGTTGTCATTGTCTGTTTCTGATCAGAAAGCAGCTGCAAAAGAGCTTCGCTTGTTAACGAAGCGGACACCTTCATTTCGAACCCTTTTTAAGGAATCTGGTGATGTGATCACGCAGTTGCTTCGTCCATTATCGCCGGGCAGTGCTTGTACTCATCCTGATCTTCAAGAGGATTTGATCACAACTGTTCTGAATCTCTCAATTCTTGACGATAATAAGAAAGTGTTTGCAGAGGATCCAAACCTCATTAACCTGCTGATTGATGCCTTGAAATGGGGAACCATTCAAACAAAAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAGCACATCATTGGGAAATCTGGAGCTATCAAACATTTGATTAGCGTTCTAGATGAGGGACATCAAATTGCCATGAAAGATGCGGCATCAGCCATATTTAACCTATGTCTTGTCCACGAGAATAAAGGGAGGACAGTAAGAGAAGGGGCAGTTAAGGTCATTTTGAATAAGATCATGAACCGCATTCTAGTTGATGAGCTGTTGGCTATACTAGCACTCCTCTCAAGTCATCCCACGGCTGTTGAAGAAATGGGCCATCGCGGCGCTGTTCCTTTCTTACTGAGTACTATAAGGGAGAGCACATCAGAAAGGTGCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGTTATAGTGATAGAACAAAGTGGAAGgaaatcaaagaagaagaaaagaccAATGGTTCACTGTCGAAGCTTGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTAGCAGTATTCTAGAGAGGGTTAACAGATCTCCATCGTTAACTCACACTGCTTAG 1368 0.4167 MAAAATKRDESSELKERLRKLVKSIVESDDYTLQIADDAIATLSSLKDFKSRSINNNNGTKNSFSSKLDQFTLPPEFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIAQWCKERGLELPKPNTRDTDEVVTDADKDRLDALLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLRPLSPGSACTHPDLQEDLITTVLNLSILDDNKKVFAEDPNLINLLIDALKWGTIQTKSNAAAAIFTLSALDSNKHIIGKSGAIKHLISVLDEGHQIAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMNRILVDELLAILALLSSHPTAVEEMGHRGAVPFLLSTIRESTSERCKENCVAILYTICYSDRTKWKEIKEEEKTNGSLSKLAQCGTSRAKRKASSILERVNRSPSLTHTA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04645 455 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Tsu07g04645 455 MobiDBLite consensus disorder prediction 428 455 - -
Tsu07g04645 455 PANTHER U BOX DOMAIN-CONTAINING 8 453 - -
Tsu07g04645 455 CDD RING-Ubox_PUB 77 119 IPR045210 -
Tsu07g04645 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 146 IPR013083 -
Tsu07g04645 455 SMART arm_5 283 323 IPR000225 GO:0005515
Tsu07g04645 455 SMART arm_5 363 404 IPR000225 GO:0005515
Tsu07g04645 455 Gene3D - 169 450 IPR011989 -
Tsu07g04645 455 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 8 453 - -
Tsu07g04645 455 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Tsu07g04645 455 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Tsu07g04645 455 SUPERFAMILY ARM repeat 177 445 IPR016024 -
Tsu07g04645 455 SUPERFAMILY RING/U-box 67 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04645 Tsu-Chr7 51045325 51047803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04645 135 455 U-box Gene Family AT3G07360 57.927 7.57e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04645 - - gmx:100806619 634.795