Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04641 ATGTCACCATCACTTACAGTTGATCCACAACTTTTCATTTGGTTTATAATATTGGCAGAGAATGGAGTTAACCGGATTTCACCAAGTAGCCAAGTAGAAAAGTGCATTTCATCAATATCCGAAGACTTGAGTGGAAAGGTAGAAACACAGAACACAGAACAACGTGATGATAACGGAAAAGGCTCTTGCACCTATAGAAATGCTGCTATAAGGAAATCCTCTGAGGATGATAGTGTTACCATAACATCATCTGCTGAAGTTTCAGATTATTCCAGGACTTCTGACCTGGAGCATCTTCAATCTGCAACCAGCTTAGCATCAAGCAATGCAAACATAAAGAAGAAAGACAGAGTGAATATTGCTTTTTCAGATGGTAATGTGTCTGGTGATCCcaaaattgaatcaaaacaaAGCATGGGGAGAGAGTCGTTGGACATTGATAATGGAGCTGCGGCTGTCCTTGGTGGTGTTGTTTGGGACATCTTCCGCCGGGAAGACGTCCCAAAGATAATTGAGTACTTAAGAAAGCACAAGAAGGAATTTCGCCATATCAACAACAAACCTGTTGATTCAGTTATACATCCCATTCATGATAAGACTATATTCTTAAATGAGAGACATAAGAAACAGCTAAAAAGAGAATTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGAATGTCCTCATCAAGTGAGAAACAGACAGTCCTTTGGACTCTGAAAATCGAGGTTTTACATCCTATTCACAGTCTATAA 783 0.3908 MSPSLTVDPQLFIWFIILAENGVNRISPSSQVEKCISSISEDLSGKVETQNTEQRDDNGKGSCTYRNAAIRKSSEDDSVTITSSAEVSDYSRTSDLEHLQSATSLASSNANIKKKDRVNIAFSDGNVSGDPKIESKQSMGRESLDIDNGAAAVLGGVVWDIFRREDVPKIIEYLRKHKKEFRHINNKPVDSVIHPIHDKTIFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGMSSSSEKQTVLWTLKIEVLHPIHSL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04641 260 Pfam JmjC domain, hydroxylase 155 235 IPR003347 -
Tsu07g04641 260 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 23 235 - -
Tsu07g04641 260 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 23 235 IPR045109 GO:0032454|GO:0033169
Tsu07g04641 260 SMART cupin_9 94 258 IPR003347 -
Tsu07g04641 260 Gene3D Cupin 77 237 - -
Tsu07g04641 260 SUPERFAMILY Clavaminate synthase-like 158 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04641 Tsu-Chr7 51027745 51028920 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu07g04641 JmjC 5.3e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04641 K15601 - cpap:110810980 178.333