Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04627 ATGTTGAAGTTTTCTCGCATGCTTCCTTCATCTTCCAGGAATCAGTTATTGGAAATTCTTTCGTCTAAGAAACTTGAAGTTAGGGATTTCTCCACTGCTACAAATAACTATTCTGCTAAAGGATATGATTCAGATCGTATATTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCATTCTCACTCAGTCCTTGTCTTCCAACTTTCACTAAGTTGGATTCTGGGGCTCTTGTGGTTGATCGTCGCGGTTCCATAATGATGAGTTTCATGCCTGCTATCGGGGAGCGCAAATATGACTCCGACAAGAAacaaAGATTTGCCTTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATAGCAATGGCTACTTTGTCTCTCTGACTGTTGTTAACATCCTGTTAAATACGAAAGACAATTTCAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTCGCATTGCCACACATTATGGGCTGGGATCGTCTAACTAGTCCGACTAATCAGCAGTCAAGTGGGAAAGTCAGCTTTCAACCGAAGATGAACTCACACATTTTAGACTCAGAATGGGAAAAGTGA 690 0.413 MLKFSRMLPSSSRNQLLEILSSKKLEVRDFSTATNNYSAKGYDSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERKYDSDKKQRFALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLTVVNILLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTSPTNQQSSGKVSFQPKMNSHILDSEWEK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04627 229 Pfam Whirly transcription factor 53 185 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tsu07g04627 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 17 229 - -
Tsu07g04627 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 17 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tsu07g04627 229 SUPERFAMILY ssDNA-binding transcriptional regulator domain 44 213 IPR009044 GO:0003677|GO:0006355
Tsu07g04627 229 Gene3D Transcriptional Coactivator Pc4; Chain A 37 210 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04627 Tsu-Chr7 50829010 50832281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04627 44 229 Whirly Transcription Factor Family AT1G71260 65.979 2.71e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Tsu07g04627 Whirly 1.4e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04627 - - gmx:100817863 345.51