Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04625 ATGGAACACAGTGATAATCAGTTAAGCTCTTTCttccaccaccacaaccaccaacaacaccaacaaGGAAATTCCACCACCGTATCCACCACCACTACCACCACCTCAATTCCGACGAACGGACTTTTATCGAACACAGATGGGTCCCACATACTTTATCCTCATTCAGTGGCTTCTGCTGTATCTTCTCAACTTGAACCAGCTAAGAGGAAAAGAGGAAGACCTAGAAAATATGGAACACCTGAACAAGCCTTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCCCCTACTCCACCTTCTGATAACAGTAGCAACAAGAACACCACTCACTCTTTTTCTCCTTCTCCTTCTTTCTCTTCTAAGAAATCTCATCCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGCAAATGTCATTGCTGTTGCTGCCGGTGAGGATGTTGGCCAGAAAATTTTGCAATTTATGCAACAAAATAGGGGTGAGGTATGCATTCTATCTGCATCCGGTCCCATCTCTAATGCCTCTCTTCGTCAACCAGCATCTTCAGGAGGCAACATTACATATGAGGGTCGGTTTGATATTATTTCGCTTACCGGTTCCTATGTCCGTAATGAAACCGGAGGGCGAAGTGGTGGCCTCAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGCGGTGGTGTTGGTGGGCCCCTTAAAGCTGCCGGTCCAGTTCAGGTAATCATAGAAGGAAATGCAAATGAAATTTGTAGGTTGGAAACATGA 774 0.4289 MEHSDNQLSSFFHHHNHQQHQQGNSTTVSTTTTTTSIPTNGLLSNTDGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTPPSDNSSNKNTTHSFSPSPSFSSKKSHPLSLGNAGQGFSANVIAVAAGEDVGQKILQFMQQNRGEVCILSASGPISNASLRQPASSGGNITYEGRFDIISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIIEGNANEICRLET 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04625 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 245 IPR005175 -
Tsu07g04625 257 MobiDBLite consensus disorder prediction 86 128 - -
Tsu07g04625 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 249 - -
Tsu07g04625 257 Gene3D - 138 254 - -
Tsu07g04625 257 ProSiteProfiles PPC domain profile profile. 132 257 IPR005175 -
Tsu07g04625 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 245 - -
Tsu07g04625 257 CDD DUF296 140 223 IPR005175 -
Tsu07g04625 257 MobiDBLite consensus disorder prediction 60 128 - -
Tsu07g04625 257 MobiDBLite consensus disorder prediction 15 48 - -
Tsu07g04625 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 245 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04625 Tsu-Chr7 50815372 50819686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04625 26 245 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 55.128 1.25e-62 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04625 - - gmx:100809675 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04625 07 50815372 50819686 Tsu07g04625 07 50815372 50819686 ECH