Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04624 ATGGAAAAAGGGTTTTGTTCTTCTTTGTTGTTATTGCTATTATTGATTACTTCTTTTGTGATATCTGTTTATGGTGAATATGCACATTGTAactgtgatgatgatgatgattatgggATTTGGAGTATACAAAGTATTTTAGTTTGTCAAAAAGTGAGTGATTTTTTCATTGCTATTGCATATTTTTCTATACCCCTTGAGCTTCTTTACTTTGTTAGTTACTCCAATGTTCCATTTAAATTGGTATTCCTTCAATTTGTTGCTTTCATTGTTCTATGTGGTTTGACTCATTTACTCAATGCCTATACTTACTATGGTCCTCATTCCTTTCATTTGTTTCTATCTCTCACTGTTGCTAAATTCTTCACTGCCCTTGTTTCTTGTGCCACTGCAATTACTTTTCCTACCTTGATTCCTCTTCTTTTGAAAATCAAGGTGAGGGAGTTGTTTTTGAGGCAGAATGTGTTGGAATTGGGACAAGAGGTTGGGATTATGAAGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACGCGTGAGATTAGGAAGTCGTTAGATAAGCATACTATATTGTATACTACCCTTGTTGAGCTTTCAAAGGCGTTGGAGTTGCATAATTGTGCGGTTTGGATGCCTGATGAGGACAGAAGGGTGATGCATTTGACTCATGAGTTGAAACCAAATCCGGCAAAGAGTTTTCATAGTTCTATTTCTGTAAGTGATTTGGATGTGTTAGAGATAAGAAAGAGCAAGGGGGTGTCGATTTTGAGGCCTGATTCTACACTTGGAGCTGCGAGTAGTGGTGGATCTGAGGATTCGGGTGCTGTAGCAGCTATTCGTATGCCGATACTTcatgtttcaaattttaaagGAGGGACACCGGAGTTTGTTGAGACATCTTATGCTATACTTGTTTTGGTtcttccaaaatcaaaatcaagggCTTGGACCTACCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTTGCTGTGGCCCTGTCTCATGCATCTGTTCTTGAAGAATCTCAGCTAATGAGACAGAAACTCGCTGAGCAAAACCGGGCGTTGCAACAGGCACAAAAGTATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGAAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATGTAAGACCTGAACAGAAGATTGTTGTTGACACAATGTTGAAAGTTAGCAATTCGCTCTCGCGTTTGATAAATGATGTTATGGAGATTTCGGCTAACGATAAAGGAACTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCATGATGAGAGAAGCTTCTTGTATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAATTGATGTGCAGAGATCTTTGCCTGATATGGTAATAGGTGACGAGGCAAGGtcttttcaattaattttgcATATGATTGGCTATTTATTGAACTTATATGATAGAGGTACTCTCATTTTTCGAGTTTCTCTTGAAAGTAATTCTGGAAAGGATGATAGGAGTTCTGGAATATGGAGATCAAACATGCAAAATGATgatgtatatataaaatttagctTCCAGATAGCCGGTACTAGTTCCCATTCAGATGAATCAATTTTGACTAGAAGTAGTGCTAGTATGATGCACCACAACAATGAACCTAAGGAGGGTTTGAGCTTCAGCATTTGCAAAACTCTTGTGCAGATGATGCAAGGTAATATCTGGGTATCACCAAACTCTCTGGGTTTGGCACAAGGAATGACACTTCTTCTCAAGTTTCAATTAGGATCATCGCGCGGAAGATTTGTTCTAGCACATAAAGAATTTTCAAACCAACAGTTTAAAGGGCTTAATGTTATTTTAGCCGATGATGATAAAGTAAACATGACTGTAACAAAGAAGCTGCTTGAGAAGCTAGGTTGTGAAGTAATCGCGGTTTCATCGGGTTTTGATTGTTTGGCTGCTATAACTGCCTCCAGTGTATCATTTAAAGTCATCCTATTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCCTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTTCAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCACGAGTTAGCTGATGAAATTAGGACAGTCCTGCTACGTGCAGGTGAAAAAttctaa 2286 0.3775 MEKGFCSSLLLLLLLITSFVISVYGEYAHCNCDDDDDYGIWSIQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFVAFIVLCGLTHLLNAYTYYGPHSFHLFLSLTVAKFFTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPNPAKSFHSSISVSDLDVLEIRKSKGVSILRPDSTLGAASSGGSEDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSKSRAWTYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAQKYAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDNVRPEQKIVVDTMLKVSNSLSRLINDVMEISANDKGTFQLELKHFHLHSMMREASCIAKCLCVYKGFGLEIDVQRSLPDMVIGDEARSFQLILHMIGYLLNLYDRGTLIFRVSLESNSGKDDRSSGIWRSNMQNDDVYIKFSFQIAGTSSHSDESILTRSSASMMHHNNEPKEGLSFSICKTLVQMMQGNIWVSPNSLGLAQGMTLLLKFQLGSSRGRFVLAHKEFSNQQFKGLNVILADDDKVNMTVTKKLLEKLGCEVIAVSSGFDCLAAITASSVSFKVILLDLHMPEMDGFEVARKIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHELADEIRTVLLRAGEKF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04624 761 PIRSF Ethylen_sen_hybr_HK 2 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Tsu07g04624 761 Gene3D - 436 616 IPR036890 -
Tsu07g04624 761 Gene3D - 337 435 - -
Tsu07g04624 761 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 754 - -
Tsu07g04624 761 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Tsu07g04624 761 SMART gaf_1 187 346 IPR003018 GO:0005515
Tsu07g04624 761 CDD REC_ETR-like 635 750 - -
Tsu07g04624 761 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 597 IPR036890 -
Tsu07g04624 761 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 357 437 IPR036097 GO:0000155|GO:0007165
Tsu07g04624 761 Gene3D - 635 760 - -
Tsu07g04624 761 Gene3D - 171 336 IPR029016 -
Tsu07g04624 761 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
Tsu07g04624 761 PANTHER ETHYLENE RECEPTOR 9 754 - -
Tsu07g04624 761 SUPERFAMILY GAF domain-like 190 339 - -
Tsu07g04624 761 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Tsu07g04624 761 Pfam GAF domain 189 336 IPR003018 GO:0005515
Tsu07g04624 761 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Tsu07g04624 761 Coils Coil 342 362 - -
Tsu07g04624 761 SUPERFAMILY CheY-like 631 754 IPR011006 -
Tsu07g04624 761 CDD HATPase_ETR2_ERS2-EIN4-like 478 609 - -
Tsu07g04624 761 ProSiteProfiles Histidine kinase domain profile. 379 615 IPR005467 -
Tsu07g04624 761 Pfam Response regulator receiver domain 637 750 IPR001789 GO:0000160
Tsu07g04624 761 SMART REC_2 635 750 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04624 Tsu-Chr7 50808491 50811629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04624 21 759 Miscellaneous Gene Families AT3G04580 60.956 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu07g04624 GAF 1.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04624 K14509 - gmx:100805023 1213.36