Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04610 ATGGCAAAGACTCCTTGTTGTGAAAGGATGGGAATGAGGAAAGGACCATGGAGTGCTGAAGAAGATCATATATTGATTTCTTATATTCAAACATATGGTCATGGAAATTGGCGTGCCCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGGCTTCGATGGATAAATTACTTGAGACCAGATATCAAAAGAGGAAAATTCagcaaggaagaagaagattcCATCTTAAAGCTACATGAAATTCTTGGAAATAAATGGTCAGCTATTGCAGCAAGATTACCCGGAAGAACGGATAATGAAGTAAAGAACTTTTGGCATACTCATTTGAAGAAAAGGGTCCAAAAGAATAAAGTGCACAATGCCAATATTACCTCTTTTTCATATACTTTGCAAGAAGCACAAGCAAGTGATGCTTCTAGTGTCggtgaaaaaattgtgatttctAATTATGGTTTATTAGCCTCAAGTAAGGATCCATCAGTTGTTGTAGGCACAGAATTTTGCAATGCAATTTCTTGTGATACTTTAGGAGAAAATATGGATAATCATGGTTCAAGTCAGATTAGTGAAGAAATGGAATTTTGGTATAATGTATTCATCAAATCAGGGTAA 621 0.3366 MAKTPCCERMGMRKGPWSAEEDHILISYIQTYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDSILKLHEILGNKWSAIAARLPGRTDNEVKNFWHTHLKKRVQKNKVHNANITSFSYTLQEAQASDASSVGEKIVISNYGLLASSKDPSVVVGTEFCNAISCDTLGENMDNHGSSQISEEMEFWYNVFIKSG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04610 206 CDD SANT 69 112 IPR001005 -
Tsu07g04610 206 Gene3D - 14 66 - -
Tsu07g04610 206 CDD SANT 16 61 IPR001005 -
Tsu07g04610 206 PANTHER MYB TRANSCRIPTION FACTOR 1 206 - -
Tsu07g04610 206 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Tsu07g04610 206 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g04610 206 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu07g04610 206 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Tsu07g04610 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g04610 206 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g04610 206 Gene3D - 68 139 - -
Tsu07g04610 206 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g04610 206 SMART sant 66 114 IPR001005 -
Tsu07g04610 206 SMART sant 13 63 IPR001005 -
Tsu07g04610 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04610 Tsu-Chr7 50716175 50717445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04610 1 202 MYB Transcription Factor Family AT2G31180 48.085 5.60e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g04610 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04610 K09422 - gmx:102663040 307.375