Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04604 ATGAGGATTATGATAAAGGGAGGTGTTTGGAAAAACACCGAGGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAATGGGCTCGTATATCTTCGCTTCTTGTCCGTAAATCTGCCAAACAGTGTAAAGCTCGTTGGTACGAGTGGTTAGATCCTTCCATTAAGAAAACCGAATGGACGAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCCATTGTTGGTCGTACTCCTTCGCAGTGTCTTGAACGATATGAGAAACTCCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAGCCTGGTGATGATCCTAGGAAATTGCGTCCGGGGGAGATTGACCCGAATCCTGAGTCAAAGCCTGCACGACCTGATCCGGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGTGCTCGGTTGGCTAATACGAAAGGTAAGAAAGCGAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCTAGGAGACTTGCTTCTTTACAGAAAAAGAGAGAATTGAAGGCTGCTGGAATTGATGTGAGGCAGCGGAGGAGGAAAAGGAGAGGGATTGACTATAATGCAGAAATTCCCTTTGAGAAGAGGCCTCCTCCGGGTTATTTTGATGTTGCTGATGAGGATAGGACGGTGGAGCAGCCAGCATTCCCTACTACTATTGAAGAACTTGAGGGAAAAAGAAGGATTGATGTCGAGGCGCAGCTGAGGAAGCAAGACGTTGCAAGGAATAAAATTGCCGAGAGGCAAGATGCCCCTGCTGCTATTCTACATGCCAACAAGCTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCAAGTGACCTTGTCAGCAGCGAGGAACTCACCGAAGGCAGCAGTGCTACACGTGCTCTTCTCTCTAATTATCCACAGACACCCAACCAAGCAATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACACCACTGTTGGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACACTCCAAACCCACTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGTCTTACTCCCAGAAGTGGTATGACACCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCTAAGGGAACTCCTCTTAGGGATGAGCTACATATCAATGAAGATATGGAGATGCACGACAGTGCTAAACTCGAGCTACAGAGACAAGCtgatatgaaaaaaagtttgcGCTCTGGTTTAAGCAGCCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCCTGAGGAGAAGATTGAGGAGGATATGTCTGATAGAATGGCTAGAGAAAAGGCTGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTATTGAGCTTATTAGGAACTCATTGATAAGAGCTGACGAGGACAAGAGTTCATTTGTTCCACCAACCAATATTGAGCAAGCCGATGAGATGATAAGAAAGGAGCTTCTAACCTTACTGGAGCATGACAATGCCAAATATCCACTTGAGGAGATAGCAAATAAGGAGAGAAAGAAAGGATCCAAGCGAGCAGCAAATGGGCCTGCTGTCCCTGTCATAGACGATTTTCAGGAGGACGAGATGAAAGATGCTGATAAGTTGATAAAAGATGAAGCCGAGCATCTTCGTGTGGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCATTAATGATTTAATGTACTTTGTCACCCGTAATGCATATGGTCTATCAAGTGTTGCGGGAAACATGGAGAAGGTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGTAAGCTGGATGAAGGTAAGGAGAAATTGATACGACTTGAGAAGAAGGTTACAGTACTCACGCATGGTTATGAGATGAGATCAAAAAATGGTCTTTGGCCGCAGATCGAGGCCACTTTCAAGCAGATGGATATGGCTGCAACAGAATTTGAGTGTTTTCAAGGTTTGAAAAAGCAGGAGCAGTTAGCAGCAAAGCATAGGATAAACAATCTTTGGTCTGAAGTTCAGAAGCAAAAGGAACTTGAGAGAACTTTACAGAAGAAATACGGAGATCTTATGGTAGAGCTGGAAAGGACACAAAATATAATGGAGCAGTTCAGGGTAGAAGCACAACAGAAGGAAGAAATTGAAGCCAAGAACCATGCAATAGAAGAGGTACAAGCACAACAGCAAGAAGAAACTGAGGCAAAGAATCATGTCCTTGAGAGTACTGAAGCCACGGCTGATGAAATTAATGTGCAGGGTACAGAAAATTGTGTAGCGGTACCCATCTCAGCTGACCAGGAAATAGTTACTGTGCAAGATCAGGATACTTCTAGCTCCAAAATTGATATGGATGTGGATTCTTCTTGTGAAGCACAAGCTACACACATCACTGGTGTTACATTGCCAGATGCACCTGCTGCAGAGGATGAAAATTCAAAAGCCGTAGAAGGCGAAAACATTGGAAGCGTTATTGAAAATAGTGAGACCGCGGTAGATACAAGTGCTGCAGTGGAAATAAAAAGTAACGAGGAAAATGGTGAGGGTCAAGATGTTGCCAATCCAGATGAGATTATGGAAGCTGCAAACAAACCTGATAACATGAAAGAAGCTACCCTGCTTGATGACATGCAAGTTGATAATGGTAAAGGAAATGAGGCAAATTAG 2970 0.4394 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDVRQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRTVEQPAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLVSSEELTEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMEMHDSAKLELQRQADMKKSLRSGLSSLPQPKNEYQIVMQPVQEDAEEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPRPPPASIELIRNSLIRADEDKSSFVPPTNIEQADEMIRKELLTLLEHDNAKYPLEEIANKERKKGSKRAANGPAVPVIDDFQEDEMKDADKLIKDEAEHLRVAMGHENDSLDEFVEAHTTCINDLMYFVTRNAYGLSSVAGNMEKVAALQNEFENVRSKLDEGKEKLIRLEKKVTVLTHGYEMRSKNGLWPQIEATFKQMDMAATEFECFQGLKKQEQLAAKHRINNLWSEVQKQKELERTLQKKYGDLMVELERTQNIMEQFRVEAQQKEEIEAKNHAIEEVQAQQQEETEAKNHVLESTEATADEINVQGTENCVAVPISADQEIVTVQDQDTSSSKIDMDVDSSCEAQATHITGVTLPDAPAAEDENSKAVEGENIGSVIENSETAVDTSAAVEIKSNEENGEGQDVANPDEIMEAANKPDNMKEATLLDDMQVDNGKGNEAN 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04604 989 CDD SANT_CDC5_II 55 106 - -
Tsu07g04604 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Tsu07g04604 989 MobiDBLite consensus disorder prediction 337 358 - -
Tsu07g04604 989 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 798 - -
Tsu07g04604 989 MobiDBLite consensus disorder prediction 380 424 - -
Tsu07g04604 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Tsu07g04604 989 Coils Coil 796 836 - -
Tsu07g04604 989 Coils Coil 167 187 - -
Tsu07g04604 989 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Tsu07g04604 989 SMART sant 58 105 IPR001005 -
Tsu07g04604 989 SMART sant 6 55 IPR001005 -
Tsu07g04604 989 MobiDBLite consensus disorder prediction 337 355 - -
Tsu07g04604 989 MobiDBLite consensus disorder prediction 940 989 - -
Tsu07g04604 989 MobiDBLite consensus disorder prediction 409 423 - -
Tsu07g04604 989 Pfam Myb-like DNA-binding domain 10 70 - -
Tsu07g04604 989 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Tsu07g04604 989 Coils Coil 689 716 - -
Tsu07g04604 989 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Tsu07g04604 989 Gene3D - 5 58 - -
Tsu07g04604 989 MobiDBLite consensus disorder prediction 110 149 - -
Tsu07g04604 989 CDD SANT 10 53 IPR001005 -
Tsu07g04604 989 Gene3D - 59 114 - -
Tsu07g04604 989 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04604 Tsu-Chr7 50667009 50674086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04604 1 833 MYB-Related Transcription Factor Family AT1G09770 75.000 0.0 1229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g04604 Myb_Cef 4e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04604 K12860 - gmx:100790369 1460.28