Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu07g04585 | ATGGCTCCCGATGCTTCTGATGCACTTGCAGtgagacagatAGTTCAAAACTTTCTCAACGCCGCTCGTAACGGAAATctcgatctcttaaaaaAATTTGCTGAACAATTAGATGAGGGAAAAGATTTAGCAAAAACAGTTGAAGCAATTAAAGATGCAAACAAACGTGGTGCACTTCACTTTGCTGCAATTGAAGGACAAACGGAGATTTGCAACTATCTACTACACGAATTGAAGCTTAACATCGATTCCAAAGACGATGATGGTGAAACTGCTCTTATTCACGCTGCACGTCAAGGACACACGGCTACCGCTAAGTTTCTTATCGACCGTGGTGCTGATGCCACTATTGCTAGCAATCTAGGAGCTACCGCGTTGCATCATTCTGCGGGgatagGAGATACCGAGTTACTTGAGCATTTGCTGTCCAAAGGAATTAATCCTGACTTAGAAAGTGATGCGGGAACACCTTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTTACTGTTCTATTAAAACACGGTGCAAATCCCAATGCTGAAACTGATGATGGCATTACCCCACTCCTTTCATCTGTGGCAGCTGGTTCTGTAGCATGCTTAGAGCTGTTAATACAGGCAGGTGCTAAAGTAAATGTTATTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTCTAAATTCTTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGTAATCGCGCAGCTGTTGAGATATTGTTCCCCGCAACATCTAAAATTGATGGCATTCCTTCTTGGACTGTTGATGGGATACTTGAGTATATTCAATCAGAAAGTAAAACACAGCAGGATAAATTGGTAGATGCCAAAGAAAATAGCCGTCCTGAGGATGCTGTTTCCCGAGAGCAAAATATCCCTGAGGTGACACCTGAAGCCAAAAAGAGAGCAgcagaatcaaaatcaagagGGGATGAGGCTTTTAAAAGGCAAGACTATCATATGGCAATAGATTCCTACACACAGGCAATTGATCTGAATCCCAGCGATGGTACGTTGTATTCAAATAGAAGTCTATGTTGGATTAAGCTGGGTCAAGCCGAGCATGCTTTAGCTGATGCAAAAGCCTGTAGAGCGTTAAGACCAGATTGGTCCAAAGCTTGTTATAGAGAAGGTGCAGCCTTGCGTTTGTTGCAGAAATTTGACGAAGCTGCAAATGCTTTTTATGAGGGTGTAGTGCTTGACCCCGAGAGCAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTTGAAGCTGGAAAGAAATTTCATGGCACAACTGAGAATAAATCATAG | 1383 | 0.4223 | MAPDASDALAVRQIVQNFLNAARNGNLDLLKKFAEQLDEGKDLAKTVEAIKDANKRGALHFAAIEGQTEICNYLLHELKLNIDSKDDDGETALIHAARQGHTATAKFLIDRGADATIASNLGATALHHSAGIGDTELLEHLLSKGINPDLESDAGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLLSSVAAGSVACLELLIQAGAKVNVIAGGATPLHIAADNGSLELLNSLLKAGADPNVSDEDGVKPIQVAAGRGNRAAVEILFPATSKIDGIPSWTVDGILEYIQSESKTQQDKLVDAKENSRPEDAVSREQNIPEVTPEAKKRAAESKSRGDEAFKRQDYHMAIDSYTQAIDLNPSDGTLYSNRSLCWIKLGQAEHALADAKACRALRPDWSKACYREGAALRLLQKFDEAANAFYEGVVLDPESKELVNAFREAVEAGKKFHGTTENKS | 460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu07g04585 | 460 | Gene3D | - | 123 | 187 | IPR036770 | - | |
| Tsu07g04585 | 460 | Gene3D | - | 10 | 122 | IPR036770 | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 186 | 218 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | tpr_5 | 402 | 435 | IPR019734 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | tpr_5 | 368 | 401 | IPR019734 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | tpr_5 | 334 | 367 | IPR019734 | GO:0005515 | |
| Tsu07g04585 | 460 | Pfam | Ankyrin repeats (3 copies) | 122 | 182 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | Pfam | Ankyrin repeats (3 copies) | 185 | 249 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | Pfam | Ankyrin repeats (3 copies) | 20 | 117 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 54 | 84 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 121 | 150 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 88 | 117 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 251 | 280 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 153 | 182 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 186 | 215 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | SMART | ANK_2a | 218 | 247 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | ProSiteProfiles | TPR repeat profile. | 334 | 367 | IPR019734 | GO:0005515 | |
| Tsu07g04585 | 460 | SUPERFAMILY | TPR-like | 333 | 446 | IPR011990 | GO:0005515 | |
| Tsu07g04585 | 460 | SUPERFAMILY | Ankyrin repeat | 19 | 273 | IPR036770 | - | |
| Tsu07g04585 | 460 | PANTHER | BNAC03G33870D PROTEIN | 1 | 457 | - | - | |
| Tsu07g04585 | 460 | PRINTS | Ankyrin repeat signature | 122 | 137 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | PRINTS | Ankyrin repeat signature | 169 | 183 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 186 | 215 | - | - | |
| Tsu07g04585 | 460 | Gene3D | - | 188 | 283 | IPR036770 | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 121 | 153 | - | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 88 | 120 | - | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 121 | 153 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 153 | 185 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | MobiDBLite | consensus disorder prediction | 301 | 343 | - | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | TPR repeat profile. | 402 | 435 | IPR019734 | GO:0005515 | |
| Tsu07g04585 | 460 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 1 | 457 | - | - | |
| Tsu07g04585 | 460 | Gene3D | Tetratricopeptide repeat domain | 332 | 447 | IPR011990 | GO:0005515 | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 88 | 120 | IPR002110 | GO:0005515 | |
| Tsu07g04585 | 460 | MobiDBLite | consensus disorder prediction | 300 | 343 | - | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 218 | 250 | - | - | |
| Tsu07g04585 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 218 | 250 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu07g04585 | 125 | 305 | Ion Channels | AT2G25600 | 30.045 | 2.28e-11 | 64.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu07g04585 | - | - | gmx:100798118 | 765.377 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu07g04585 | 07 | 50547880 | 50553797 | Tsu07g04585 | 07 | 50547880 | 50553797 | ECH |