Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04583 ATGGTTGTTAAAGTAAAGAGAGAAACTCTTGAAGCATGCATGACATGTCCTCTTTGTCAAAAGCTTCTCGAAGATGCTACTACTATTTCTCTATGTCTTCATACTTTTTGTAGGAAATGTATATATGAGAAGCTTTCAGATGAAGAGGTGGATTGTTGTCCGGTATGCGAAATTGATCTGGGCATTCTTCCGGTCGAAAAGCTCAGGCCCGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACGTACAAAGGGTCAAGCCGAAGATCAAACCGAAAATCAAGCCGAAGATCAACCCGAAAATCAAGCCGAAGAAGTTGTTCCCTCAATACCCCTGCCAGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACTAGCTTTACAGGAAAGAGAACAAAAAATGGTACAAGAAAGGCTTCTGGTTTACGTGGATGCAGTTTTATCCCTGAAGAATCCATAAAGAAGGAAGAAACGCGCAGTGAAGATCTGAATTCTTCCATAGGCGAGACTTCTAAGAAGCATAGATCCAATGAAGATACAGACAACAATATTGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAATTGTCTTGTTGAAGCGGCCAATAGAACAAAGCCCTCCAGGTCAAATTTACAAGGGACTTCCAAATCCGAGTCTCCAATTACTCCTCATGGTGGACTAGTGATGTCAGAAACTACAACCAAATCAGAGCCACCTACATCTGTCCAGAGTGAAATACACATGCCTAAAACCAAGAACAAGAGTAATGGACATAAAAGAAAGTTTGGAGATGACAAGGATGGAAACACCTTGCCTTCAGGACCGGTGAAGCGAAAAAGGCCCCGTCCTTCTAATCAAAAGAAGGCAGCAGCATCTGAGATGTCTGCCTCAGCCCAACTCATGTTAGATGCAACAGGGAGCAGGCACAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCAGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACTGTACCTGTCTCATTTATTCAAAAGTACCTCATGGCGAAACTTAATCTTGCTAGCGAAGCTGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTACCAACTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACATCATCAACACCAAAAAAGCTACCGGCATCCGTGGGATCTTCGGCTAAGGAGTTTGTGATGGCTTTATCGTATTGTCGAAAGACCTTACCTCATTGA 1326 0.4268 MVVKVKRETLEACMTCPLCQKLLEDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCEIDLGILPVEKLRPDHNLQDIRTKIFPFKRTKGQAEDQTENQAEDQPENQAEEVVPSIPLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKNGTRKASGLRGCSFIPEESIKKEETRSEDLNSSIGETSKKHRSNEDTDNNIDLTEGKADLWTPLNCLVEAANRTKPSRSNLQGTSKSESPITPHGGLVMSETTTKSEPPTSVQSEIHMPKTKNKSNGHKRKFGDDKDGNTLPSGPVKRKRPRPSNQKKAAASEMSASAQLMLDATGSRHNRKNSPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPVSFIQKYLMAKLNLASEAEVEIMCRGQPVLPTLQMHNLVDLWFCTSSTPKKLPASVGSSAKEFVMALSYCRKTLPH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04583 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 109 IPR013083 -
Tsu07g04583 441 MobiDBLite consensus disorder prediction 275 290 - -
Tsu07g04583 441 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Tsu07g04583 441 MobiDBLite consensus disorder prediction 220 267 - -
Tsu07g04583 441 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 2 438 - -
Tsu07g04583 441 Gene3D - 310 418 - -
Tsu07g04583 441 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Tsu07g04583 441 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 438 IPR044807 GO:0004842
Tsu07g04583 441 SUPERFAMILY RING/U-box 9 80 - -
Tsu07g04583 441 MobiDBLite consensus disorder prediction 129 149 - -
Tsu07g04583 441 MobiDBLite consensus disorder prediction 220 313 - -
Tsu07g04583 441 MobiDBLite consensus disorder prediction 85 201 - -
Tsu07g04583 441 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Tsu07g04583 441 SMART ring_2 16 56 IPR001841 -
Tsu07g04583 441 MobiDBLite consensus disorder prediction 163 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04583 Tsu-Chr7 50534516 50540992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04583 1 360 C3H Transcription Factor Family AT2G30580 43.045 1.70e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04583 K16277 - gmx:100783999 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03120 01 38392372 38395198 Tsu07g04583 07 50534516 50540992 ECH
Tsu07g04583 07 50534516 50540992 Tsu07g04583 07 50534516 50540992 ECH