Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04557 ATGTTGGATGAAGGAGAAGCAGAGCAGTTTGAGTTAGAGCAATTGAGGACTACTACTCCACTTCTTCATTCCTCTTCTGctacaaacaacaacaacaccttcCACTACATTCCCTTAATTCACCCTTCTACTTCCAATTCTCAATTTCAAACTCAAGCAAATTTCTTCCCTCCATCAATATTATTGCCCCACCATTCTCCTACCTTTAATTCTAATTCCAATCCAATAAACTTCCAGATCCAAACTCCACCACCTCCGTTCACCGATTCCACCACCTGGACCAACCATGAACTTCTTGAACTCTTCAAGATCACATCTACCATCCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGGAAGCTAGCAGAGATTGGGATTAACAAGAGTGCTGAGAAGTGTAAGGATaagtttgaagatgataacataTCATTTTTTAAGATTCATAATAATCATAATTACCCTCGGTTTATTAGTGAGCTTCAAGATCTTTATCAAGGTGGTGTTCTTGTTAATGAACAACAAAATTCAGATGAAAAGGAAGAAACCCAACAACACCAAGAAGAAAATTCAAGAGATGATATTGATACTGACCTAGTAGTAGTGACCAAACaatgtgatgataatgatgatggcAAGGTGATAGAAAAatcaaagagaaagaagaggaagagacGCAATAGGTTTGAAATGTTGAAGAGTTTTTGTGAGACAGTGGTTAACAAAATGATGGCACAACAAGAAGAGATACACAATAAGCTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAAGAAGAATGGAAAAATCAAGAGATAGAAAGGATGAACATGATGGCACAAGAACAAGCTATTGCAAATGATAGACAATCCACCATAATTCATTTCTTGAACAAATATCTAGCTGGAGATAGCAACAACAAAAGTATAAAAGAATGTTCTTCTTCCCAATTGCACTCACAAAACCCTAATCAACCTTCTTCTAATGTGATAGCACAACGAAACCCTAGCTCAAGTGAGACAGTAGTAGAGTCAAATTACACTTCTACCCTTGGTGTGCCAACAACAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTCATAAACCTCAAGTCTACTACAAGTGTAATAAATAGAAGCAACaatgttgaagaaaaagaaggaaatagTAACAAGGGACCATTGTGGGAGAGAATCTCTGAAGGAATGTTAGAGATGGGATACAAGAGAAGTGCAAAGAGATGTAAAGAAAAATGGGAAAACATAAACAAGTATTTTAAGAAGACAAAAGATGTTgtcaataaaaagaaaaggtcATTGGATTCTAGGACATGTCCTTATTTTCATCAACTTAGTTCTTTGTATAATAATCAGCAGCAGGAGGGAAAACTAATTGTTCAATCTCAATTAGTAACAAATCCAATCTCAAATTCAGCTGACCAAGTAGATGATCAACCACAAGCTCAGTCTTCTGATTCTCCAGTTGGGTCTAGTGTGGTATAA 1548 0.3411 MLDEGEAEQFELEQLRTTTPLLHSSSATNNNNTFHYIPLIHPSTSNSQFQTQANFFPPSILLPHHSPTFNSNSNPINFQIQTPPPPFTDSTTWTNHELLELFKITSTIHNFFPDQLITWDHVSRKLAEIGINKSAEKCKDKFEDDNISFFKIHNNHNYPRFISELQDLYQGGVLVNEQQNSDEKEETQQHQEENSRDDIDTDLVVVTKQCDDNDDGKVIEKSKRKKRKRRNRFEMLKSFCETVVNKMMAQQEEIHNKLLEDMLKRDQEKLAREEEWKNQEIERMNMMAQEQAIANDRQSTIIHFLNKYLAGDSNNKSIKECSSSQLHSQNPNQPSSNVIAQRNPSSSETVVESNYTSTLGVPTTMEKLEDRRRWPRDEVLALINLKSTTSVINRSNNVEEKEGNSNKGPLWERISEGMLEMGYKRSAKRCKEKWENINKYFKKTKDVVNKKKRSLDSRTCPYFHQLSSLYNNQQQEGKLIVQSQLVTNPISNSADQVDDQPQAQSSDSPVGSSVV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04557 515 MobiDBLite consensus disorder prediction 178 200 - -
Tsu07g04557 515 MobiDBLite consensus disorder prediction 324 354 - -
Tsu07g04557 515 Coils Coil 174 194 - -
Tsu07g04557 515 SMART sant 89 148 IPR001005 -
Tsu07g04557 515 SMART sant 370 440 IPR001005 -
Tsu07g04557 515 Coils Coil 271 291 - -
Tsu07g04557 515 Gene3D - 93 151 - -
Tsu07g04557 515 Gene3D - 374 443 - -
Tsu07g04557 515 MobiDBLite consensus disorder prediction 179 200 - -
Tsu07g04557 515 ProSiteProfiles Myb-like domain profile. 371 438 IPR001005 -
Tsu07g04557 515 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 15 313 - -
Tsu07g04557 515 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 321 504 - -
Tsu07g04557 515 CDD GT1 372 445 - -
Tsu07g04557 515 Pfam Myb/SANT-like DNA-binding domain 371 468 IPR044822 -
Tsu07g04557 515 Pfam Myb/SANT-like DNA-binding domain 92 155 IPR044822 -
Tsu07g04557 515 PANTHER - 15 313 - -
Tsu07g04557 515 PANTHER - 321 504 - -
Tsu07g04557 515 MobiDBLite consensus disorder prediction 490 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04557 Tsu-Chr7 50392603 50394907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04557 93 471 Trihelix Transcription Factor Family AT5G28300 39.216 4.02e-75 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu07g04557 Myb_DNA-bind_4 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04557 - - mtr:MTR_7g114860 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04557 07 50392603 50394907 Tsu01g03389 01 41919075 41921760 PCT