Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04550 ATGAATGGTGTCACACAGTCTGAAACAGATGACTCAGATTTTGTTGAAGTTGATCCAACCGGTAGATATGGCAGATACAATGAAGTTCTTGGTAAAGGAGCTTCCAAAACAGTATATAGAGCATTTGATGAGTATCAAGGAATTGAAGTTGCTTGGAATCAAATCAAACTATATGATTTCTTGCAAAACCCCGAAGATCTCGAGAGACTTTACAGTGAAATTCATCTTCTCAAGACATTGAAACACAGAAACATTATGAAATTTTACACATCTTGGGTTGATACTGCAAATAGGAATATCAACTTCATTACTGAATTGTTTACTTCTGGTACTCTTAGACAGTATAGGCAAAAGCACAAGAGGGTTAACATAAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGCAAGGACTTCTATATCTTCATAGCCATGACCCGCCTGTGATCCATAGAGATCTTAAATGTgataatattttcattaatGGTAATCAAGGGGAAGTTAAGATTGGGGATCTTGGTTTGGCTGCGGTTCTCCGGAAATCTCATGCTGCTCATTGTGTAGGAACACCCGAATTCATGGCACCAGAAGTATACGAAGAGGAATATAATGAACTAGTTGACATATATTCCTTCGGTATGTGTGTATTAGAAATGGTTACATTTGAATATCCTTATAGTGAATGCAGCCATCCAGCACAAATCTACAAGAAAGTTTCTTCTGGGAAAAAACCAGATGCTTTGTATCAAGTGAAGGATCCAGAAGTGCGGGAATTCATTGAGAAATGCCTCGCAACAGTGTCTCTAAGACTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCGAATTGATGATGACGAATATGATTTGAGATCGGTAGATGTTGAAGAGTTTGGTGACTTGGGTCCTCTCGTTTGTCAGTCATTCCTTTCACTCGACCGTAGCTATAGTAACATAAGTACTGAATATTCAAATGGTTGTGGGTATGAAGTAGATTGGTATTCTCATCCAGCTGAGATTGAACATGGAATTGAACTTTTCGAGTGCCATGACGATGAACCCTCCAAAGATGTTGACATAAGCATCAAAGGCAAGAGAAAAGACGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGTCATATCCGAAACATTTATTTCCCATTCGACATAGAGTTGGACACAGCATTAAGCGTAGCAACTGAAATGGTTGCGGAACTCGACATTACGGATCAGGATGTTACAAGCATAGCCGGTATGATAGATGGAGAAATTGCTTCCTTGGTACCCGAATGGAGGACAGAACCAGGAAATGAGGAAACCACCAACTATGCAAATCAAAGTTTCTGTGACAATTGTGTGTCTAATCATACTACGGATACAGATTTTCTTTTACGTAATGAAGGTGGAAAAAACTTGCAGCTTCGTCAATGCTGCACGCACGGATGTACTTCAATGCATGGCCGGTTCGAGGAGATAACGTTCCAATCTGAGGAGTATGACGAAAACCACATTAGCGAGGATGCACCTAACATATCAAGCGAATCAGACTACTTGCAGTATCAGGAATCATGGAATCATCACGAAAGCCGTGAACTTAGTCCTGTAGAGTCTACTCGAAGCCATTCGGGTGAACAATATGAACTATTAGATAAATCATCGTTGACCGAAGATAAAAGAGAGGCAGTATGGGAAAACGGTTTCGCACCCAACACAGGAAAGTCCTCGAAAAATTTATCAGGAAACAATTATTTGTCTACTATTGATTCGCTATATTGCGGAGTCAAGAGCGATTATGAGAAAGAGATCCAACATGAGTTGAGGTGGCTCAAAGCAAAATATCAAATGGAGTTAAGGGAACTTAGGGATAAACAATTGGGTCTAGAAGCTAAATCTCCACATACTACTAGTAACCACGACACAACAGCAGAAACTGTAAACGGATTCGATAATTACGGGAACTATGATTCTAGTTACCATTCTCAAGAACACAAGAGCCACCCCAATTTGGACACCCGAAGGGCCCAAAATTGTGCGATGACATGTTCTGATGAAGATGTGGTAACTGCAAAGAGTTTTTACACAAGGTTATTGCTTCCAGACACACTACATAGAACTGTTTCCCTCCCTGTTGATGCTGTGGatgtataa 2160 0.4009 MNGVTQSETDDSDFVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYQGIEVAWNQIKLYDFLQNPEDLERLYSEIHLLKTLKHRNIMKFYTSWVDTANRNINFITELFTSGTLRQYRQKHKRVNIRAVKHWCRQILQGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAVLRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVSSGKKPDALYQVKDPEVREFIEKCLATVSLRLSARELLDDPFLRIDDDEYDLRSVDVEEFGDLGPLVCQSFLSLDRSYSNISTEYSNGCGYEVDWYSHPAEIEHGIELFECHDDEPSKDVDISIKGKRKDDGGIFLRLRIADKEGHIRNIYFPFDIELDTALSVATEMVAELDITDQDVTSIAGMIDGEIASLVPEWRTEPGNEETTNYANQSFCDNCVSNHTTDTDFLLRNEGGKNLQLRQCCTHGCTSMHGRFEEITFQSEEYDENHISEDAPNISSESDYLQYQESWNHHESRELSPVESTRSHSGEQYELLDKSSLTEDKREAVWENGFAPNTGKSSKNLSGNNYLSTIDSLYCGVKSDYEKEIQHELRWLKAKYQMELRELRDKQLGLEAKSPHTTSNHDTTAETVNGFDNYGNYDSSYHSQEHKSHPNLDTRRAQNCAMTCSDEDVVTAKSFYTRLLLPDTLHRTVSLPVDAVDV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04550 719 CDD STKc_WNK 22 281 - -
Tsu07g04550 719 Gene3D - 370 459 - -
Tsu07g04550 719 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Tsu07g04550 719 MobiDBLite consensus disorder prediction 525 550 - -
Tsu07g04550 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 707 - -
Tsu07g04550 719 Coils Coil 614 634 - -
Tsu07g04550 719 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 426 IPR024678 GO:0004674|GO:0005524
Tsu07g04550 719 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
Tsu07g04550 719 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04550 719 MobiDBLite consensus disorder prediction 504 550 - -
Tsu07g04550 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Tsu07g04550 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 707 - -
Tsu07g04550 719 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04550 719 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Tsu07g04550 719 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04550 Tsu-Chr7 50342300 50345937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04550 1 506 MAP Kinase Kinase Kinase AT3G22420 57.537 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu07g04550 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04550 K08867 - gmx:100775959 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04550 07 50342300 50345937 Tsu07g04550 07 50342300 50345937 ECH
Tsu07g04550 07 50342300 50345937 Tsu01g03395 01 41987016 41990647 PCT