Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04548 ATGGCGGACAAGGCTGTTACCATCCGAACCAGAAAGTTCCTCACGAACCGCCTTCTTTCACGAAAGCAATTTGTTGTTGAAGCTAATCATCCAGGGAAACCAAATGTTTCTAGGGTCGAGCTTAAGGAAAAGCTGGCAACAATGTATGGAGTGAAGGACAATGCTGTGTTTGTTTTCGGATTCCGAACACAATTTGGAGGTGGCAAATCAActggttttggtttgatttatgATTCTGTTGAAAGTGCAAAGAAGTATGAGCCTAAGTATAGGCTTATCAGGAATGGTCTTGACACCAAAGTTGAGAAGTCAAGGAAGCaaatgaaggagagaaagaatagagcTATGAAGATTCGTGGTGTGAAGAAGACCAAGGCCTCTGATGCTGCTAAGGGTGGAAAGAAGAAATAA 411 0.3844 MADKAVTIRTRKFLTNRLLSRKQFVVEANHPGKPNVSRVELKEKLATMYGVKDNAVFVFGFRTQFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAMKIRGVKKTKASDAAKGGKKK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04548 136 MobiDBLite consensus disorder prediction 101 136 - -
Tsu07g04548 136 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 107 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu07g04548 136 PANTHER 40S RIBOSOMAL PROTEIN S24 1 136 - -
Tsu07g04548 136 PANTHER 40S RIBOSOMAL PROTEIN S24 1 136 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu07g04548 136 Hamap 30S ribosomal protein S24e [rps24e]. 4 105 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu07g04548 136 Gene3D - 1 131 - -
Tsu07g04548 136 Pfam Ribosomal protein S24e 25 102 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu07g04548 136 ProSitePatterns Ribosomal protein S24e signature. 65 87 IPR018098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04548 Tsu-Chr7 50327249 50329242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04548 1 131 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 77.273 2.03e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04548 K02974 - sind:105165299 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04548 07 50327249 50329242 Tsu07g04548 07 50327249 50329242 ECH
Tsu07g04548 07 50327249 50329242 Tsu01g03398 01 42028512 42030972 PCT