Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04530 ATGGGATGTGTGATTGGTCACCAAGCCAAATCTGAAAGAATATCTCAAAAGAAAGTTGATGGAGaatcgaagaagaagaagaatgtggTTGAGATTGAGATTGAAAATGGTGTAAGGGACAAGTATGGTGGTTATGCTGATGATGATAGGGTTCAAGTTCAACAACCATCTCAAGGTGGCGAAAGTAGAAGAAGATCAAAGGCAAATCCAAGGTTAAGTAATCCACCTAAGCATTTACATGGTGAACAGGTTGCTGCTGGATGGCCACCTTGGCTCACTGCAGTTTGTGGTGAAGCTCTCAGTGGTTGGATTCCGCGAAAAGCTGACACATTCGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACTCGTTGACTGGTAAAATTGTTGCTCTGAAGAAGGTTCGATTTGATAATTTGGAACCTGAGAGTATTAAATTCATGGCTAGAGAGATTCTTATTCTGCGAAGGTTGGATCATCCAAATGTTATTAAGTTGCAAGGTTTAGTTACATCGAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTATATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCGGTAATCAGGTTTACAGAGTCTCAGATAAAATGTTACATGCGTCAGCTGTTATCGGGACTTAAGCATTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGATTGGCATCCTTTTTTGATCCAAACCGTAGGCAACCGATGACTAGTCGTGTAGTAACACTTTGGTATCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGATTATGGTGTGGGTGTAGACCTTTGGAGTGCTGGATGTATTCTAGGAGAGTTACTGGCTGGAAAACCAATTATGCCCGGCCGTACAGAGGTGGAGCAATTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAATACTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTTAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGACATTCAAAGGTTTTCCACCGTCTGCTCTACCCCTTATTGATAATCTTCTTGCAATTGATCCTGTAGAACGGAAAACCGCCTCGGACGCTTTAAGAAGTGAGTTCTTTACCACAGAACCGTATGCTTGTGATCCTTCTAGTCTTCCAAAATACCCCCCAAGCAAagaaatggatgttaaaagacGGGATGACGAAATGAGGAGGCAAAGAACTGGAAGCAAAGCTCAGATTGATGGTTCAAAGAAGCATCGTATACGTGAATTTGTTGTGAAAGCTATGCCTGCTCCTGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGACGTCTAGTCAGTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCACCACCACATAAAGACGGACAACTTGGCTTTCCTTTGGGATCTTTGCATCATATTGATCCAGATACCATACCTACCGACGTATCTTTCATTTCAACCACATATACCTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCAATTAGTAATGCTGCTGATATTGGAGTGCCGAAGCGGAAGAAACACACTGCAGGAGAGGTATGGGATTTATCAAAACCACAAAAAGGTGCCTCCAAGGATACATTTAAAGGAAAGGGAATTATAGTTTAG 1722 0.4088 MGCVIGHQAKSERISQKKVDGESKKKKNVVEIEIENGVRDKYGGYADDDRVQVQQPSQGGESRRRSKANPRLSNPPKHLHGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDSLTGKIVALKKVRFDNLEPESIKFMAREILILRRLDHPNVIKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPVIRFTESQIKCYMRQLLSGLKHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNRRQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKGFPPSALPLIDNLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDVKRRDDEMRRQRTGSKAQIDGSKKHRIREFVVKAMPAPEANAELQSNIDRRRLVSHANAKSKSEKFPPPHKDGQLGFPLGSLHHIDPDTIPTDVSFISTTYTYSKEPFQAWSGPISNAADIGVPKRKKHTAGEVWDLSKPQKGASKDTFKGKGIIV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04530 573 MobiDBLite consensus disorder prediction 40 83 - -
Tsu07g04530 573 MobiDBLite consensus disorder prediction 1 27 - -
Tsu07g04530 573 MobiDBLite consensus disorder prediction 11 27 - -
Tsu07g04530 573 CDD STKc_CDK9_like 111 395 - -
Tsu07g04530 573 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Tsu07g04530 573 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04530 573 MobiDBLite consensus disorder prediction 405 439 - -
Tsu07g04530 573 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Tsu07g04530 573 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Tsu07g04530 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Tsu07g04530 573 MobiDBLite consensus disorder prediction 413 439 - -
Tsu07g04530 573 Gene3D Transferase(Phosphotransferase) domain 1 194 435 - -
Tsu07g04530 573 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04530 573 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04530 573 PANTHER CELL DIVISION PROTEIN KINASE 55 550 - -
Tsu07g04530 573 PANTHER OS01G0367700 PROTEIN 55 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04530 Tsu-Chr7 50194381 50198598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04530 103 435 Core Cell Cycle Gene Families AT5G10270 52.149 2.65e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu07g04530 Pkinase 4.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04530 K08819 - gmx:100786837 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03421 01 42250435 42256527 Tsu07g04530 07 50194381 50198598 ECH
Tsu07g04530 07 50194381 50198598 Tsu07g04530 07 50194381 50198598 ECH
Tsu07g04530 07 50194381 50198598 Tsu01g03421 01 42250435 42256527 PCT