Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04516 ATGGCGAATGACGATCACCACAAAGACTATTGTATATGGAACCCTAAAACTAGCCCTGCTAACAGATTAAAGATCTCAATGAAAGATgctttttttaatcataaacaCAATTCTGCTTCTACCCAAGATTGCATCACTGACTTGGATGCTAATAAACAATCTGAATCGGTTACCGGTTGTTCAAACTTAAGGGAGAGATTTCAATTGGACAAGGCTTTTAAGACATGGAAGAAAAGATCAATTAATCACACATCCTCCCTCCCTTCTTTTTGTGTGCCTATACCAAACTCAACAAAgtctaaaagcttaagcttcAGAGAAAATCCTACTCTATCTGATCTATACAACTTCAGATCTTCTTTGGTGAATTTCACCCTCTCAGACCTCAGAATTGCAACCAACAATTTTAGCAAAGAAAATTTAATCGGGAGAGGGGGATTCGCGGAGGTTTACAAGGGCTGCCTTCAAGATGGACAGCTGGTAGCTGTTAAGCGGCTGAATAAAGGGACTTCGGATGAGAGAACGTCAAACTTTCTATCTGAGCTTGGCATTATTGCTCATCTAAACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTAGAAGAAGAAATGCACCTTGTCTTTCAACTATCTCCATTGGGAAGTTTAGATACTCTTCTTCATGGTtccaataaaaacaaattagatTGGAGTAAAAGGTATAAAATTATAGTTGGGATAGCTGATGGACTCCTATATCTTCATGAGAATTGTCAACGGCGAATCATTCATAGAGATATTAAAGCAGAGAATATTCTGCTGACAGAGAATTTTGAGCCTCAGATTTGTGATTTTGGACTTGCAAAGTGGTTACCAGAACAATGTAGCCACCATAATGTACAGAAATCTGAAGGCACGTTCGGGTATTTTGCACCTGAATATTTGCTGCATGGCATAGTAGATGAGAAAACTGATGTTTACTCCTTCGGTGTCCTTCTTTTAGAGATTATAACTGGACGTAGAGCTTTCGATCATTTGCACCAAAGTCTTGTGTTATGGGCAAAGCCTTTGCTTGATGCTAATAACATGACGGACCTTGTTGATCCTTCTATTGGAGGTGATTATGaccaacaacaaatggatcGTACTGTTTTGACTGCGTCTCTTTGTGTTGAAAACTCTCCTATCTTACGCCCCCGTTTCAATACTGCTAAGAGGTGA 1203 0.3749 MANDDHHKDYCIWNPKTSPANRLKISMKDAFFNHKHNSASTQDCITDLDANKQSESVTGCSNLRERFQLDKAFKTWKKRSINHTSSLPSFCVPIPNSTKSKSLSFRENPTLSDLYNFRSSLVNFTLSDLRIATNNFSKENLIGRGGFAEVYKGCLQDGQLVAVKRLNKGTSDERTSNFLSELGIIAHLNHPNTAKLIGCGVEEEMHLVFQLSPLGSLDTLLHGSNKNKLDWSKRYKIIVGIADGLLYLHENCQRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQCSHHNVQKSEGTFGYFAPEYLLHGIVDEKTDVYSFGVLLLEIITGRRAFDHLHQSLVLWAKPLLDANNMTDLVDPSIGGDYDQQQMDRTVLTASLCVENSPILRPRFNTAKR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04516 400 Pfam Protein tyrosine and serine/threonine kinase 139 346 IPR001245 GO:0004672|GO:0006468
Tsu07g04516 400 Gene3D Phosphorylase Kinase; domain 1 97 210 - -
Tsu07g04516 400 ProSiteProfiles Protein kinase domain profile. 136 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04516 400 SMART serkin_6 136 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g04516 400 Gene3D Transferase(Phosphotransferase) domain 1 213 400 - -
Tsu07g04516 400 SUPERFAMILY Protein kinase-like (PK-like) 110 398 IPR011009 -
Tsu07g04516 400 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Tsu07g04516 400 PANTHER OS08G0249100 PROTEIN 5 396 - -
Tsu07g04516 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Tsu07g04516 400 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 5 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04516 Tsu-Chr7 50066646 50070017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04516 122 397 Receptor kinase-like Gene Family AT4G11460 43.816 3.10e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu07g04516 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04516 - - cam:101512181 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03437 01 42396230 42398770 Tsu07g04516 07 50066646 50070017 ECH
Tsu01g03861 01 46400681 46403464 Tsu07g04516 07 50066646 50070017 ECH
Tsu08g03679 08 54843566 54870363 Tsu07g04516 07 50066646 50070017 ECH
Tsu07g04516 07 50066646 50070017 Tsu07g04516 07 50066646 50070017 ECH
Tsu07g04516 07 50066646 50070017 Tsu01g03437 01 42396230 42398770 PCT