Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04503 ATGTGTTTACcagaggaagaaagagaaagagaaagagccATGGCACTAGAACCAACTCTATTATATCTACATCAACAACAAGACCCTTTTAGCTACGGATTCAACAAAGAAATCTACAACTACAACTTGTTAACAGATTTTGAAGCTAATAACTTTGACTGCAGCAACTTCAACCTTCAAaatgatcaacaacaacaacaaggttcTGTTTCAAGTTTTCTCAATAACCTGCAAACAGAGAATTACCCTTTTGAAACTAACAACTGTTCATCATCACAACAACAACCATTATTGTTGCCACAAATGGATGAAGTAGAAACACTTCATGTGACAAATCCATGTTTAGATGATAGCTCAATTTCGACTCGTTCTCGTCCTAAGAAACGCAGAGTCAAAACAAGTAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTAGAACGCaatagaagaaaacaaatgaatgAGTATCTCTCCGTTCTTCGCTCTCTCATGCCCGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATAAACTTTGTTAAGAAGCTTGAACAAAGATTACAATTTCTTGGTGTTCAGAaacaaaaagaggaaaaaattgATACTATTGTTGAGAATAAAAACAAGCCCTTTTctgaatttttcacttttccACAATACTCAACTAATGTTAAAGTACTGTGTGAAAATTCTGAGGCAAATCATGGTGAGATTGAGAAAATGGGTGAAGTTCAAGCTAGCACTATTGCTGATGTTGAAGTTTCAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAAGACCAAAACAGCTCTTGAAGATTGTTTCTAGTTTGCATGGAATGTGTTTAACAATCTTGCATCTTAATGTCACTACAACTGATGAATTTGTCTTCTATTCTCTCAGTGTTAAGGTGGAAGATAATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAACGATTCACCAAGAGTCTTCATCAATATTAAATTAA 1053 0.321 MCLPEEERERERAMALEPTLLYLHQQQDPFSYGFNKEIYNYNLLTDFEANNFDCSNFNLQNDQQQQQGSVSSFLNNLQTENYPFETNNCSSSQQQPLLLPQMDEVETLHVTNPCLDDSSISTRSRPKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQRLQFLGVQKQKEEKIDTIVENKNKPFSEFFTFPQYSTNVKVLCENSEANHGEIEKMGEVQASTIADVEVSMVESHANLKIRSKKRPKQLLKIVSSLHGMCLTILHLNVTTTDEFVFYSLSVKVEDNCKLGSVDEIAAAVYQMLETIHQESSSILN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04503 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 193 IPR011598 GO:0046983
Tsu07g04503 350 PANTHER MAX DIMERIZATION, MAD 14 346 - -
Tsu07g04503 350 Coils Coil 190 210 - -
Tsu07g04503 350 MobiDBLite consensus disorder prediction 113 138 - -
Tsu07g04503 350 Pfam Helix-loop-helix DNA-binding domain 143 194 IPR011598 GO:0046983
Tsu07g04503 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 204 IPR036638 GO:0046983
Tsu07g04503 350 Gene3D - 132 211 IPR036638 GO:0046983
Tsu07g04503 350 SMART finulus 148 199 IPR011598 GO:0046983
Tsu07g04503 350 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04503 Tsu-Chr7 49959774 49961377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04503 14 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.667 1.05e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g04503 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04503 - - gmx:100782243 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04503 07 49959774 49961377 Tsu07g04503 07 49959774 49961377 ECH
Tsu07g04503 07 49959774 49961377 Tsu01g03455 01 42644433 42646305 PCT