Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04502 ATGAAAAACAACCACTTATTCATCCTCCTCATACTACCGGGTATCCTTCTTCTCTCCGCCACAAaagcccaagcccaagcccgaAACAACGACACCACCAACGGCTACGCCACAGATTTGAACCAATTCAATCCTTCCTTcgctataataatagttattttaGTAGCAGCTCTTTTTCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCCGATACACCTTCCTCCAACCTCGTTCTCCCTATCACCAACGCTCGTAGAGCAGCGCGTGGACTCGACGCATCAGTAATCGATACTTTTCCGATTCTAGAATACTCTGAAGTCAAGATCCATAAGATCGGAAAAGAGGTTCTAGAGTGTGCAGTTTGTTTAATGGAATTCGAAGACACCGAAACGCTGCGTTTAATTCCAAAGTGTGATCACGTTTTTCACCCTGAGTGTATCGATGAGTGGTTATCTTCACACACAACGTGTCCCGTTTGTCGTGCTAATCTTGTTCCTCAACCCGGTGACTCAGTTCACGGTGTTCCTGAGTCAAACAACGAGTCACAATCACAAGACGTTGAAGCTCAAAACGACGCCGTTCAAACACCGACGGAAGAAGTTACTAACAACGTCGCTGCTCCTGATCCGGTCTTACTTGTTCCAGAAGTGATTTCGTTGGATAAAACGTTGAACCGGAATCGTACGCGTGGATCTCAATCGAACCGGACGCGTCGTTTTCCAAGGTCGCATTCGACCGGTCATTCATTAATCCAACCGGGTGAAAATACGGACCGGTTTACTTTGAAACTTCCTTTTAAAGTAAGGAAACAGATAATGAACCGGCAGTTACAACGGGCGAGTAGTTTAATTACTTTACCTGGTGAAAGTAGTTTGAGACAGGGTTACCGAACCGGAGGGGAAGGAAGTAGTAGAGGAAAAAGTTCAAGATGGGTGGACCGGACTAGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTAGCTAGAGCATTGTCGTTTAGATCACCAAAGCAAAAAGTCAATACTAGCGATGATGAAGGAACTTCTTCTGCTGCTGCTCCTATCATGCCATCATCAGCTGTTGACTCCGCCCGCCCTCACAATTGA 1128 0.4441 MKNNHLFILLILPGILLLSATKAQAQARNNDTTNGYATDLNQFNPSFAIIIVILVAALFLMGFFSIYIRRCSDTPSSNLVLPITNARRAARGLDASVIDTFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSVHGVPESNNESQSQDVEAQNDAVQTPTEEVTNNVAAPDPVLLVPEVISLDKTLNRNRTRGSQSNRTRRFPRSHSTGHSLIQPGENTDRFTLKLPFKVRKQIMNRQLQRASSLITLPGESSLRQGYRTGGEGSSRGKSSRWVDRTRSFKSDRWVFTRAPSFLARALSFRSPKQKVNTSDDEGTSSAAAPIMPSSAVDSARPHN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04502 375 SUPERFAMILY RING/U-box 120 170 - -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 172 210 - -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 175 205 - -
Tsu07g04502 375 SMART ring_2 121 162 IPR001841 -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 225 258 - -
Tsu07g04502 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 168 IPR013083 -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 292 314 - -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 292 307 - -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 342 363 - -
Tsu07g04502 375 PANTHER RING FINGER DOMAIN-CONTAINING 1 313 - -
Tsu07g04502 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 313 - -
Tsu07g04502 375 CDD RING-H2_EL5_like 120 163 - -
Tsu07g04502 375 Pfam Ring finger domain 120 163 IPR001841 -
Tsu07g04502 375 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Tsu07g04502 375 MobiDBLite consensus disorder prediction 338 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04502 Tsu-Chr7 49939956 49941597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04502 3 337 Rapid Response to Elicitors AT3G05200 44.828 3.30e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04502 K10664 - gmx:100781706 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04502 07 49939956 49941597 Tsu07g04502 07 49939956 49941597 ECH
Tsu07g04502 07 49939956 49941597 Tsu01g03456 01 42683651 42685478 PCT