Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04497 ATGGACCATCAAGGACATAATCAGAATCCACAAATGGGGGTTGTCGGTAGCGGAGGTCAAATGCCGTACGGATCTAACCCATATCAGTCAAACCAAATGACTGGAGCCCCAGGCTCAGTTGTTACGTCAGTCGGGGGCATGCAATCCACTGGCCAACCTGCTGGAGGTCAGCTGGGTCAACATCAACTTGCGTATCAGCATATTcatcagcagcaacaacaacaacttcagCAACAGCTCCAAGCCTTTTGGGCAAATCAGTATCAAGAAATTGAAAAAGTTACTGATTTCAAGAATCACAGCCTTCCTCTGGCAAGGATAAAAAAGATCATGAAGGCGGACGAAGATGTTAGAATGATATCTGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATCTTGGAGTTAACTCTGCGTTCTTGGAACCACACTGAAGAAAACAAAAGGAGGACACTTCAGAAGAATGATATTGCTGCTGCAATCACAAGGACTGATATCTTTGATTTCCTGGTTGACATTGTTCCCCGGGAGGACTTGAAAGACGAAGTGCTGGCATCGATCCCAAGGGGAACAATGCCTGTTGGTGGGCCTGCTGATTCTCTTCCATACTGCTATATGCCACCTCAGCATGCCCCTCAAGTTGGACCTACTGGTGTGATAATGGGCAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAGCCTCATCCGTTCATGGCACCACAAATGTGGCCACAGCCTTCAGACCAGCGACCACCTTCTCCAGATCACTAG 783 0.461 MDHQGHNQNPQMGVVGSGGQMPYGSNPYQSNQMTGAPGSVVTSVGGMQSTGQPAGGQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADSLPYCYMPPQHAPQVGPTGVIMGKPVMDPNMYAQQPHPFMAPQMWPQPSDQRPPSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04497 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Tsu07g04497 260 SUPERFAMILY Histone-fold 67 173 IPR009072 GO:0046982
Tsu07g04497 260 MobiDBLite consensus disorder prediction 243 260 - -
Tsu07g04497 260 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Tsu07g04497 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Tsu07g04497 260 MobiDBLite consensus disorder prediction 1 15 - -
Tsu07g04497 260 MobiDBLite consensus disorder prediction 233 260 - -
Tsu07g04497 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Tsu07g04497 260 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04497 Tsu-Chr7 49911463 49913965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04497 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 4.77e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu07g04497 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04497 K08066 - gmx:100527803 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04497 07 49911463 49913965 Tsu01g03464 01 42774616 42784542 PCT