Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04495 ATGATTCTGTATGGCACTGCCCTGCTAGCTGTCACCGATTCTTTTTCTGTGGTCCGTGGATATGGGTACTCAGTGTTTTCGGAACCAAGCATCATTTTCAAGGGAAGAATGGATCGTCAAGGGCATAACCAAAATCCACCAAGGGGGTATGTTGGTAGCGCAGATCAATGGCCGTTCGGATTTATTCCGTGGCAACCAAACCAAATCGCTGGGGCGGCACCTGTATCACTTGTTAGATCAGTTGGGGGAACGCAAGCCACTGGTCAACCTGCTGGAGCTCAGCTAGGCCAGCTTCAACAGTATAACCAAAACCCAGTCGTTGGTAGCACAAATAATTCGCCGTTCGGATTTTTGGCGTTTCAGCCAATCCAAATAATGACTGGGGCCCCAGGATCAGTTGTTACATCACTTGGTGGCATGCAAACCACTGGTCAACCTGCTGGAACTCAGCTGGATCAGCATCAACTTGCTTATCAGCAGCAACTGCAAGCCTTCAGGGTATACCAAACGACTGGGGCCCCAGGATCAGCTGTTACATCAGTCGGGGGCATGCAGTCCACTGGTCAACTTGTTGGGGCTCAGCTGGGTCAACATCAACTTGCTTATCAGCATAttcagcagcagcagcaacttCAGCAACAGCTGCAAGCCTTTTGGGCAAACCAGTACCAAGAAGTAAAAAAGGTTACTGATTTCAAGAACCACGGCCTTCCCCTGACAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTCAGAATGGTATCGGATGATGCGCCTGTGATACTTGCAAAGGCCTGTGAGATGTTCATATCAGAGTTAACCATGCGTTCGCGGAACCACAGTAAAACCAGAACACTTCAGAAGAATGATATTGCAGCAGCAGTCTCAGAGACTGATACCTTTGATTTCCTGGTGGACATTATGCCTCTTGCATTTCAGTTTCCAGGGAACTTCTGCAATGGTGGTGGGTGCCAAACTGCGAATCCAGAAGGTCCATTGTTGCCATCAGAAACTGTAGATGACAGTTTACCTGTATCTCCTGCATTTCAGATTATAGAAGCGGACGAGGATATCAAGGAGGAAAATTATGATTAA 1098 0.4681 MILYGTALLAVTDSFSVVRGYGYSVFSEPSIIFKGRMDRQGHNQNPPRGYVGSADQWPFGFIPWQPNQIAGAAPVSLVRSVGGTQATGQPAGAQLGQLQQYNQNPVVGSTNNSPFGFLAFQPIQIMTGAPGSVVTSLGGMQTTGQPAGTQLDQHQLAYQQQLQAFRVYQTTGAPGSAVTSVGGMQSTGQLVGAQLGQHQLAYQHIQQQQQLQQQLQAFWANQYQEVKKVTDFKNHGLPLTRIKKIMKADEDVRMVSDDAPVILAKACEMFISELTMRSRNHSKTRTLQKNDIAAAVSETDTFDFLVDIMPLAFQFPGNFCNGGGCQTANPEGPLLPSETVDDSLPVSPAFQIIEADEDIKEENYD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04495 365 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 37 100 - -
Tsu07g04495 365 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 167 310 - -
Tsu07g04495 365 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 102 162 - -
Tsu07g04495 365 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 37 100 - -
Tsu07g04495 365 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 102 162 - -
Tsu07g04495 365 SUPERFAMILY Histone-fold 209 305 IPR009072 GO:0046982
Tsu07g04495 365 Gene3D Histone, subunit A 199 310 IPR009072 GO:0046982
Tsu07g04495 365 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 167 310 - -
Tsu07g04495 365 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 237 296 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04495 Tsu-Chr7 49893463 49899351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04495 215 310 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.737 5.71e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu07g04495 CBFD_NFYB_HMF 4.7e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04495 K08066 - gmx:100785287 184.111