Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04477 atgTCAGATTCACAGTCAAATTCAGAGGTTTTCAGTGTTCGAATTGTCTCCATAGATCATTACATGGCACCGCCAATTCCAGACATCGATATCTCTTACAGTAGATTCCATGGTGGAAAAGTGAATGAAGTTCCCGTAATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATTCATGGAGCTTTACCTTATTTATATGTGCCGTGTTCGGATATACCACTTCAACTAGACCAAGGTGATGCATACACCTATACGGTAGCTGCTTCTCTCGAGAAAGCCTTGAAGCTTAAAGGCAGTGCTGGTTCATCGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCGCTCATTTGAAGAGTTTTTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCTCGTGCCGCAAATCATCTCTTGGCAGGTGCTGTTCTTGATAAAAGTTTACAGCCTCATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATTAGGTTCCGTCATCCCATGCCAGATTCTACTAACAAGAAATTAGACATCAATAGCCCGCACCAAAAGGCAGATCCAGGTGCTGATGTATGTTTAGAGTCAAAACTGTGGACATCTTCCATGATCTCATTTGACTGGATGTGGTCACTGCCTAGTGAATTAGGTGCTTCATCAAATGATAAGGCTCACTTTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCGGCAATTTAAAATGTTTTCATCTCTCTCACAAACAAGCTCAAATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGGAAACGAACGGGGATTCATGAGGCTACTATGACTTCTGATCCTGGTAAACCACTACCAGAAGATGTCATGAAACTTCTCTGGTCTGGTCTCGACTTTGAGAATAAACTTGTTCAAAATTGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTGGAGAAAGAACTCAGAGAAACAGACATAATAGGCTCAGCATCACCACCAGCTTCATTGTGTGAAAATGCCAAATTGCTTGAGGAAGGGACTGCCACATGTCTCAATTTGAAAATTGGTGAAATGCAATCAGCTGAAAAGATCGGAATGTTGGACATAAAGGATGCTGATATGGAAGCACAAAATCTTCTTAAGTGGCTTGCGACTTCTCAAGCCGCAGAGGATATAAACTCTGATGATGAACTTGCTTGTGAAACCATCTTGAGTCCCTTACTACCTGCTGCAACAATTGATGAGATGCTGGAGAAAGCGAATATGGCTTATGAGAGTGAGTCCCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGGATGAGTTAGACCTTCCAAAGAAAAAGCCTTCTAGTTCCTTTGATCACAATTGTCCTGTTGAAGCTTCATCTGACAGTATGATACCTCAAGTTGATGGTTGTAACGATGATGAATTCTCAAGTCCATGTGCTAATTTGGCTGGAACTTCTGCAGCTGAGATAAACAGTGAATACAAAAGAGCTTCTGAGTACCATTCACTGCAAAATACAAACACACGAACAGTTACTGCAGATAAAAGGAATAGACAATGGGGGTCTTTGCCATTTTCGATGACCGGAAAGGTTAATAATGTTGGAGAGCATACTACTTCACAAGTGGCTCATCTGTTTGAAAGTGAAACCAGGGATTCTGCTCTCTCAGATTTCTTAACCAGAAATGAGGTTAAAAATAATActtgtattaaaaataaaagaaatgttGGTGAAGGCACTTCAGATTCAAAAGAAGTACATAGTTTAGTTAGCTGCTCTGTACGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGATGAACGTGAATCTGGAACTGCAAAGAAGCTTATTTTGGACAGGCACGGGGGACCAAAAACATGCCTTTGGCAAAAACTTGAATTGGAAACAATGCAAACTGATGAATTAGAAACAGAACTCCAGACAAATTCTGATAATGAAGTGAGCAGTCGTGATAATTTAGTTTGTGGGAAACAGTCACTTCCATCTGGCAGtgatagtttttttaatatatcaaaAGATGAATGTTTAGGTCAACATGAAAGGGGGTGTCTAGAAGCAAGTGTGGTGTTGAGAAACTCCACAAATCAAAGTCCTTCTTCAATGCATGAAGGGCCAGACCTTCTTGAAACTTCACATTTTATTGATGCCATGGACAGATCGATAGCTTGCAGGGAGAAAAATACCAAGGATGGAACAACTTATGCAAAACCTGTAGCTTCTGATGCCTATACCCCAAGTTCCTCTTTAGATGCTCAATTGAGAACTGATGATGATCATAAAGTCAGAGCTCCTGAGAGGTGTCAGCAAATTGATTCTGCTGCTTCAGGTAGTAGACAGAACTCGTTAATTGATGACAAAGTGTCGGGCAAAAGTAACTGcatggataaaaaaaattgtggtagCCGATGTTTTGTGCAGCATGAACTGATGAAGTCTTACGAGCATGCTGTGGGAAAAAGTGCTGCAAGTGACACAAGAGTATTGCTAAGTGAAAAGGTTGATAATCAAAAGCTGGATGAAAAGTTGTTGTGTGAGACTGTTGGCTCAGAAACCATTGTTGATGACCTGAAGAGTAATCACGCGAAATTAACTGAAATAACCACAGGCAATAACTCTTTAGTTGACAAGAATCTTGAAAGTAATTTGTCCTTGCCAACCTTCTCTGATACCCATTTACATTTGGACGAGGATGATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGGAATTCCCAGAAACAGATGGAATCTTGGAAAAAGTGTGTTACTACTAAAACCCCCGGATCCTCTGGGAGAAACAGTGTTTCCACTTACTATCAAAATGATGGCTCTCACCTATACCTATTAACACCTAATATTCTGCCTCCTGCTGCCAGTTCTGTGCAGAGATGGCTATTTTGTGATGAGAGAGAATCTGATGCAGAGGACCAGGATGTACCTAAATGCACATCTGGACCTCCTCTTAGGCATTCTCCTGATCAAGTGCGTCAAGAACCTGGTGCAGAGGACAAGGATGTGTCTAAATGCGCATCTGGCCCTCCTCTTAGGCCTGAGCTGTATCAAGATGCTGGCACAGAAAAAAAGCTTCCATGCATTAGCAAAGGACAAACAGAAGGAACAAAAGCGTGCATGGATCGCTCTCAAGATATTTCGCAAATATCAGGCCCTGGTGAGAATTCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGGGACCCTGCTAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGCAGACCTTTTGCCTGATCCTCAATTTGATGGGGTAAACATTGTAGCTCTTGGTTTTCAGAACGATTGCGATGCTACTATTGAAGTTCAAGTTCTTTTGCATAGTAAATTTGTACCATGTCAGAGAAGTCTTGATGGCTTATCAGACTGCAAAGTCCTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTATGAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCCTGGATTAATTCTCAAGACACCGAAACATCTGAAAAAAGTATCTTGCAACCGGACATCTCGGATACTCCTAATCTAGATTGTTGTGCGCAAGAAAGTTCAATAATTGAGGATGAATGGGGACGTACACATGCTAGCGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGGAAAATTCCTTCACTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGGAAAGCAAGATATCAGTGTATCAAATATGTTATGGATAGAGCAAAGCTGAACCTTGAGATATCAAACCAACTTGATATGgTGAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGTTCACAATATCGGGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAACTATGTTGCTATCTCGCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAAAGTCAGGATTTTATTCAGATCCTGTTGTCGTGCTTGACTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAACCTTGGGCATCAAAGACTAACGTACTTGGGGTCAGTCCATTTTCACCAGAGCAACATGTGCTGCAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCAAAGAGGTGTACTTCCACGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTTAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTCCTTCAGCGGATATTTAATGCACGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCGGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATTGTTCAATGTGGACGGTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTGAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTGTCAAAGAGTCCTTCCAAATTGGCAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCCGTCACCTTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTCGTTACTAAAAAGAGATATGTTGGCTACAGTTATGAAAGCCCCAATCAAATTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACGTGTGAAGCAGTAGCAAAAATAATGGAGCGATCTTTGAGACTTTTTTTTGAGCACCAGAGTGTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTTGGGCAGAGTTTCCGTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTGACTGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTCTTGGCAATTGATTCCCCATTCAGAATAAATGATTTATATTACATTAATAAGCAAATAATACCGGCTTTACAGCGAGTATTTGGGCTTGTTGGCGCTGACCTTAACCAGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCTGTAAAGCATGCATTCACTCCAAACTTCCATCGAACCAGAATTGATTATTACTATCTCTCGAAACACTGTGTACTCTGTGGTGAGTTGGTCCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAGGTGGCTGCTGCGACAGCAATGATTGGTAAAACTTCAAAGTTGGAGCAGGAGATGCAACATCTTGTGTCTATATGTCACCACTGTGGAGGCGGTGATAGTCTTCTCGAAAGTGGTGTGAAATGCACGTCGATTTCATGCTTGGTGTTTTATGAAAGGCGAAAAGTTCAGAAAGAACTACTAGCCGCCACCCATGTTGCTGCAGACAAAGGCTTCTACCCAAAATGCACGGTAGAATGGTTTTGA 6006 0.4113 MSDSQSNSEVFSVRIVSIDHYMAPPIPDIDISYSRFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQGDAYTYTVAASLEKALKLKGSAGSSRQHVHGCSLVRARKFYGYRSFEEFFVKIYLYYPQDVSRAANHLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKIRFRHPMPDSTNKKLDINSPHQKADPGADVCLESKLWTSSMISFDWMWSLPSELGASSNDKAHFPKRQSICELEGDASVDEILNRQFKMFSSLSQTSSNVNMVQSLVPIWEEQRKRTGIHEATMTSDPGKPLPEDVMKLLWSGLDFENKLVQNCSEAETTLFCTPLEKELRETDIIGSASPPASLCENAKLLEEGTATCLNLKIGEMQSAEKIGMLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETILSPLLPAATIDEMLEKANMAYESESQQECQDILDSIDDMDELDLPKKKPSSSFDHNCPVEASSDSMIPQVDGCNDDEFSSPCANLAGTSAAEINSEYKRASEYHSLQNTNTRTVTADKRNRQWGSLPFSMTGKVNNVGEHTTSQVAHLFESETRDSALSDFLTRNEVKNNTCIKNKRNVGEGTSDSKEVHSLVSCSVRDLMRRKRSYRVEHDERESGTAKKLILDRHGGPKTCLWQKLELETMQTDELETELQTNSDNEVSSRDNLVCGKQSLPSGSDSFFNISKDECLGQHERGCLEASVVLRNSTNQSPSSMHEGPDLLETSHFIDAMDRSIACREKNTKDGTTYAKPVASDAYTPSSSLDAQLRTDDDHKVRAPERCQQIDSAASGSRQNSLIDDKVSGKSNCMDKKNCGSRCFVQHELMKSYEHAVGKSAASDTRVLLSEKVDNQKLDEKLLCETVGSETIVDDLKSNHAKLTEITTGNNSLVDKNLESNLSLPTFSDTHLHLDEDDEMPGNALDVFLPISARNSQKQMESWKKCVTTKTPGSSGRNSVSTYYQNDGSHLYLLTPNILPPAASSVQRWLFCDERESDAEDQDVPKCTSGPPLRHSPDQVRQEPGAEDKDVSKCASGPPLRPELYQDAGTEKKLPCISKGQTEGTKACMDRSQDISQISGPGENSSFTPLSQIGFRDPASVGRGQQLTLLSIEVLAESRADLLPDPQFDGVNIVALGFQNDCDATIEVQVLLHSKFVPCQRSLDGLSDCKVLNFTDEKHLFKEFMKIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDTETSEKSILQPDISDTPNLDCCAQESSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKIPSLNHKVLTKWFSSGPGKARYQCIKYVMDRAKLNLEISNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPKSGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKPWASKTNVLGVSPFSPEQHVLQDLKDQILLTPNGVMFVPSKVQRGVLPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAEVIYGDTDSMFVLLKGRTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLVTKKRYVGYSYESPNQIEPVFDAKGIETVRRDTCEAVAKIMERSLRLFFEHQSVLEVKTYLQRQWKRILLGRVSVKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDCRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFAEMPRPIREASVKHAFTPNFHRTRIDYYYLSKHCVLCGELVQASARLCNQCSENEVAAATAMIGKTSKLEQEMQHLVSICHHCGGGDSLLESGVKCTSISCLVFYERRKVQKELLAATHVAADKGFYPKCTVEWF 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04477 2001 Gene3D Helix hairpin bin 1533 1593 - -
Tsu07g04477 2001 CDD DNA_polB_zeta_exo 1139 1387 - -
Tsu07g04477 2001 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Tsu07g04477 2001 SMART polmehr3 1140 1646 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu07g04477 2001 SUPERFAMILY DNA/RNA polymerases 1454 1867 IPR043502 -
Tsu07g04477 2001 Gene3D Palm domain of DNA polymerase 1453 1698 IPR023211 -
Tsu07g04477 2001 CDD POLBc_zeta 1415 1863 - -
Tsu07g04477 2001 SUPERFAMILY Ribonuclease H-like 27 1413 IPR012337 -
Tsu07g04477 2001 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1994 IPR030559 GO:0006281|GO:0016035|GO:0019985
Tsu07g04477 2001 Pfam DNA polymerase family B, exonuclease domain 55 208 IPR006133 -
Tsu07g04477 2001 Pfam DNA polymerase family B, exonuclease domain 1202 1280 IPR006133 -
Tsu07g04477 2001 ProSitePatterns DNA polymerase family B signature. 1634 1642 IPR017964 GO:0000166|GO:0003676
Tsu07g04477 2001 MobiDBLite consensus disorder prediction 786 812 - -
Tsu07g04477 2001 Pfam DNA polymerase family B 1408 1855 IPR006134 GO:0000166|GO:0003677
Tsu07g04477 2001 MobiDBLite consensus disorder prediction 1035 1083 - -
Tsu07g04477 2001 Gene3D - 1168 1450 IPR036397 GO:0003676
Tsu07g04477 2001 PRINTS DNA-directed DNA-polymerase family B signature 1632 1640 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu07g04477 2001 PRINTS DNA-directed DNA-polymerase family B signature 1576 1588 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu07g04477 2001 PRINTS DNA-directed DNA-polymerase family B signature 1467 1480 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu07g04477 2001 Gene3D - 1709 1873 IPR042087 -
Tsu07g04477 2001 Pfam C4-type zinc-finger of DNA polymerase delta 1900 1973 IPR025687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04477 Tsu-Chr7 49769793 49785174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04477 6 256 Core DNA Replication Machinery Family AT5G63960 23.828 7.91e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04477 K02350 - gmx:100777934 3001.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04477 07 49769793 49785174 Tsu07g04477 07 49769793 49785174 ECH