Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04448 ATGAGCCGCCGATCAAGTCGAACAATATATGTTGGCAATCTTCCCGGTGATATTCGTGTGAGAGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATTGAATTGAAGGTTCCTCCAAGACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCGTTATCGAGATGGATACAAGTTTGATGGCTTGCGATTAAGAGTTGAACTTGCACATGGCGGGCGGGGCTATTCATCACCGGTAGACCGTTATAGTGGAAGCGGCGGTAGCCGTGGAGTGTCAAAGCATTCTGAGTATCGTGttTTGGTCACTGGATTACCTTCTTCAGCTTCATGGCAAGACCTGAAAGATCACATGCGTAGAGCTGGTGATGTATGTTTTTCTCAAGTTTTCCGTGACCGGGGTGGCATGACTGGGATAGTGGACTATACAAATTATGATGATATGAAATATGCTATTAGAAAACTTGACGACTCAGAATTCCGAAATGCGTTCTCTCGGGCATACATACGAGTGAGGGAATATGACCGACGGAGCTATTCTAGGAGTCCCAGTCGTGATACAAGGAGGAGTTATTCTAGAAGCCTTAGCCGCAGTCCTTATATGTCTCGAAGTAGAAGCCGCAGTCGAAGTTATAGTTATAGTAGCAGGAGCAGCAGAAGTTTGTCTCCAAAAGTGAAACACACTCGGCGGTCTTTATCTCGTTCAAGATCGCTGTCAAGATCGGAGTCAGCAAATTCATCGGTGAGATCTGAACGCAGCCAATCTGTCAACTCTGGAGACCGCTATTGA 819 0.4554 MSRRSSRTIYVGNLPGDIRVREVEDLFYKFGPIVDIELKVPPRPPGYAFVEFEDARDAEDAIRYRDGYKFDGLRLRVELAHGGRGYSSPVDRYSGSGGSRGVSKHSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDTRRSYSRSLSRSPYMSRSRSRSRSYSYSSRSSRSLSPKVKHTRRSLSRSRSLSRSESANSSVRSERSQSVNSGDRY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04448 272 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 258 - -
Tsu07g04448 272 Gene3D - 2 107 IPR012677 -
Tsu07g04448 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Tsu07g04448 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Tsu07g04448 272 MobiDBLite consensus disorder prediction 185 272 - -
Tsu07g04448 272 CDD RRM1_SF2_plant_like 8 79 - -
Tsu07g04448 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tsu07g04448 272 CDD RRM2_SF2_plant_like 108 183 - -
Tsu07g04448 272 Gene3D - 108 185 IPR012677 -
Tsu07g04448 272 MobiDBLite consensus disorder prediction 185 202 - -
Tsu07g04448 272 MobiDBLite consensus disorder prediction 203 231 - -
Tsu07g04448 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Tsu07g04448 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 258 - -
Tsu07g04448 272 MobiDBLite consensus disorder prediction 247 272 - -
Tsu07g04448 272 SMART rrm1_1 109 178 IPR000504 GO:0003723
Tsu07g04448 272 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tsu07g04448 272 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04448 Tsu-Chr7 49544123 49549186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04448 3 170 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 1.32e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04448 K12890 - gmx:100794282 321.242