Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04433 ATGGCCCTGCGTGTAAATTTCCTTTTCATAATTCTCATCCTTTTACCATCATTTGATAAGGTTCTTTCATTCCCGGATGAAATTCCGTCAAAAATCCAAACTCAAGACATGCAAGCTTTGATTGCACAAGCCTGCATGAATATCGAAAACCAAAACTCATGTCTCACAAACATTCATAACGAGCTAACAAGAACTGGTCCTCCAAGCCCAACTTCTGTCATTAATGCTGCACTCAGAACCACGATCAACGAAGCCCTAGGTGCCATCAACAACATGACAAAGATCAGTACATTTTCTGTAAATAACCGCGAGCAACTTGCCATAGAAGATTGCAAGGAGCTCGTTGATTTCTCTGTGTCAGAGCTTGCATGGTCATTAGGGGAGATGAGGAGAATTCGAGCTGGCGACCGAACCGCGCAATATGAAGGAAACCTTGAAGCTTGGCTAAGTGCAGCGCTTAGCAACCAAGACACATGCATTGAAGGCTTTGAAGGCACTGACAGACGTCTCGAGAGTTATATTAGTGGAAGCTTAACACAAGTCACTCAGCTTATCAGCAATGTTCTGTCTTTGTACACTCAACTTCATAGCTTACCCTTTCGCCCTCGGAAGAACAATACCCTGCACGAAACACATACTGATGAAAGCTGGGAGTTTCCTGAATGGATGACCGAGGCTGATCAAGAGCTCCTTAAATCTAAACCACATGGTTCGGTTGCAGACGCAGTCGTTGCATTGGATGGGAGTGGTCACTACCGTACAATCAACGAAGCTGTTAATGCAGCTCCGAGTCATAGCAATAGGAGACATGTTATCTATGTGAAGAAGGGGCTATATAAGGAGAATATAgatatgaagaagaagatgaccAACATCATGATCGTTGGTGATGGTATTGGCCAAACCATTGTCACAAGCAATCGCAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACGTTTGCTGTATCTGGGAAGGGTTTCATTGCGAGGGACATGACATTCCGGAACACGGCTGGACCAGTAAACCATCAAGCTGTGGCACTGCGTGTGGATTCAGACCAATCTGCATTCTTTAGGTGTAGCATAGAAGGGCACCAAGACACGCTTTACGCACACTCGCTAAGGCAATTCTACCGTGAATGTGAAATCTATGGTACCATAGACTTCATTTTCGGCAATGGAGCTGCTGTGCTACAAAATTGCAAGATATACACAAGAGTTCCACTTCCATTACAAAAGGTTACAATCACAGCTCAAGGTAGGAAAAGTCCACATCAAAGCACAGGATTTACAATCCAAGATAGCTATGTTTTGGCTTCACAACCTACATATTTGGGAAGGCCATGGAAGGAATATTCTAGAACAGTTTACATTAACACATACATGAGTGGAATGGTTCAACCTCGAGGGTGGCTCGAATGGCTCGGAAACTTTGCACTGGACACTTTGTGGTACGGCGAATACAGGAATTATGGACCTGGTGCATCACTAGTAGGCAGGGTTAAATGGCCTGGTTATCATGTCATTAAAGATGCTTCTACTGCCGGATATTTTACGGTTCAGCGGTTTCTTAATGGCGGTTCATGGTTGCCTAGAACAGTCCTTCATTTCTTTGTTACTCACCCTGCACTCCCTTTTTTCATATCAAGTGTTGTTGATTGGGAGGTGCTAATTAGTATCGGCAACACCAAGAATGAAGCAGTAGAAAATTCAAAAGATTCACATGTATCTTCATCAATGAAAGCCGTCAAAACTCTCTGTGCACCAACAGAATACAAAAAAGAATGCGAGGAAAGTCTCACAGAAAACGCCAGAAACATAACCGATCCAAGAGAACTCATCAAAATTGCCTTCAACATAACCATCACTAAAATCGGTGAAGGACTTGAAAAAACTCAGCTCCTTCATGAAGTTGAAAATGATCCAAGAACCAAAGGTGCACTTGACACATGTAAAGAACTCATGCATCTTTCAACCGAAGAATTCAAAAGGTCGTTAGATAGGTTCGGTAACTTTGACCTTAATAGTCTTGACAGAGTCCTAACTAGTTTGAAAGTATGGTTAAGTGGTGCCATTACATACCAAGAGACTTGTTTGGATGCTTTCGAGAATACAACGACCGATGCTGGTCATAAAATGCAAGAGATTTTGAAAACCGCTATGCATATGAGTAGTAACGGTCTTTCCATCATTAACGAACTTTCCAAAACATTCGCAGACATGAAACCTAAAGGTCGTCGTCTTTTGGAGGAAAATTATGGAGAAATGGATGTTTTTGGTAATGGTGATTTTGAGCTTCCTGAGTGGGTTGAGGATCGTGCTGGTGTTAGGAAACTACTTAAAATGACCGGAAGAAAACTTTCGGCTCATGTTGTTGTTGCTAAGGATGGAAGTGGAAATTTCACCACAATCAATGATGCTCTTAAGACTGTTCCCAAGAAAAACTTAAGGCCATATGTTATTTACATCAAGGAGGGTGTTTATAATGAATATGTCGAAGTTACTAGAAGCATGACTCATGTTGTTTTCATCGGTGATGGTGGTAGGAAATCGCGCATTACAGGCAACAAAAACTTTATTGATGGAGTTGGTACCTACAAAACCGCCACCGTTGCTGTTCAAGGAGATTTCTTTGTTGCCATTGGTATCGGTTTTGAAAACTCTGCTGGAGCACACAAGCATCAAGCAGTTGCATTGAGAGTCCAAGCTGACAGATCAATCTTCTACAAATGCAGAATGGATGGTTACCAAGACACACTTTACGCCCACACCATGCGTCAATTCTATCGCGATTGTGTTATCACAGGTACCATTGATTTCGTCTTTGGTGATTCTGTTGCTGTTCTCCAAAACTGCACATTCGTTGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTGACTGCACAAGGTAGGAAGGAAAAAACTCAACCTTCAGGATTAATCATCCAAGGAGGTTCAATTGTGTCAGATCCTAAATACTATCCAGTTAGGTTCGACAACAAAGCTTACCTCGCTCGTCCATGGAAGAATTTTTCAAGAACTATCTTCATGGATACATACATTGGTGATTTGATTACACCTGATGGTTATATGCCATGGCAAACACTAGAAGGTATCTCAGGAACTGATACATGTTTCTATGCTGAGTTCAATAACCGTGGTCCTGGTTCCGATATTTCCAAGCGCGTTAAATGGCCAGGTATTAAGACTATTACATCACAAGGAGCAGCTGGTTTCCTACCAACAGCATTTTTCCATGGAGATGATTGGATTAGGGTTACTAGAGTTCCTTATTATCCAGGAGGTGCAGGAGCTTCTCATAAAACACCAACtcattga 3348 0.4188 MALRVNFLFIILILLPSFDKVLSFPDEIPSKIQTQDMQALIAQACMNIENQNSCLTNIHNELTRTGPPSPTSVINAALRTTINEALGAINNMTKISTFSVNNREQLAIEDCKELVDFSVSELAWSLGEMRRIRAGDRTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHSLPFRPRKNNTLHETHTDESWEFPEWMTEADQELLKSKPHGSVADAVVALDGSGHYRTINEAVNAAPSHSNRRHVIYVKKGLYKENIDMKKKMTNIMIVGDGIGQTIVTSNRNFMQGWTTFRTATFAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFFRCSIEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKEYSRTVYINTYMSGMVQPRGWLEWLGNFALDTLWYGEYRNYGPGASLVGRVKWPGYHVIKDASTAGYFTVQRFLNGGSWLPRTVLHFFVTHPALPFFISSVVDWEVLISIGNTKNEAVENSKDSHVSSSMKAVKTLCAPTEYKKECEESLTENARNITDPRELIKIAFNITITKIGEGLEKTQLLHEVENDPRTKGALDTCKELMHLSTEEFKRSLDRFGNFDLNSLDRVLTSLKVWLSGAITYQETCLDAFENTTTDAGHKMQEILKTAMHMSSNGLSIINELSKTFADMKPKGRRLLEENYGEMDVFGNGDFELPEWVEDRAGVRKLLKMTGRKLSAHVVVAKDGSGNFTTINDALKTVPKKNLRPYVIYIKEGVYNEYVEVTRSMTHVVFIGDGGRKSRITGNKNFIDGVGTYKTATVAVQGDFFVAIGIGFENSAGAHKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCVITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKEKTQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGISGTDTCFYAEFNNRGPGSDISKRVKWPGIKTITSQGAAGFLPTAFFHGDDWIRVTRVPYYPGGAGASHKTPTH 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04433 1115 SUPERFAMILY Pectin lyase-like 240 541 IPR011050 -
Tsu07g04433 1115 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 583 737 IPR035513 -
Tsu07g04433 1115 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Tsu07g04433 1115 PANTHER PECTINESTERASE 42 537 - -
Tsu07g04433 1115 PANTHER PECTINESTERASE 551 1107 - -
Tsu07g04433 1115 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 196 IPR006501 GO:0004857
Tsu07g04433 1115 TIGRFAM PME_inhib: pectinesterase inhibitor domain 581 736 IPR006501 GO:0004857
Tsu07g04433 1115 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 196 IPR035513 -
Tsu07g04433 1115 Pfam Pectinesterase 792 1091 IPR000070 GO:0030599|GO:0042545
Tsu07g04433 1115 Pfam Pectinesterase 241 528 IPR000070 GO:0030599|GO:0042545
Tsu07g04433 1115 Gene3D - 786 1105 IPR012334 -
Tsu07g04433 1115 Gene3D - 238 542 IPR012334 -
Tsu07g04433 1115 SUPERFAMILY Pectin lyase-like 790 1103 IPR011050 -
Tsu07g04433 1115 ProSitePatterns Pectinesterase signature 2. 936 945 IPR033131 -
Tsu07g04433 1115 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 196 IPR035513 -
Tsu07g04433 1115 Gene3D Invertase/pectin methylesterase inhibitor family protein 580 738 IPR035513 -
Tsu07g04433 1115 CDD PMEI-like_4 54 195 - -
Tsu07g04433 1115 ProSitePatterns Pectinesterase signature 1. 817 836 IPR018040 -
Tsu07g04433 1115 Pfam Plant invertase/pectin methylesterase inhibitor 584 732 IPR006501 GO:0004857
Tsu07g04433 1115 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Tsu07g04433 1115 SMART PMEI_2 580 732 IPR006501 GO:0004857
Tsu07g04433 1115 SMART PMEI_2 36 191 IPR006501 GO:0004857
Tsu07g04433 1115 PANTHER PECTINESTERASE 42 537 - -
Tsu07g04433 1115 PANTHER PECTINESTERASE 551 1107 - -
Tsu07g04433 1115 CDD PMEI-like_3 587 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04433 Tsu-Chr7 49441137 49446060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04433 10 539 Carbohydrate Esterase AT3G05620 61.553 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04433 K01051 - gmx:100810565 920.998