Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04421 ATGGTTAAGGGAGGAAAGTTTAGTAGAAAaggaaatttgagaaaaaaggTTAGGTCAAAGGGGGGTGGTTCGGAGGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGTTGGGAATGTATCTGATTGTCCAGAGGATGATTGTTTCTCTTTAGATGGATGTGCACCTGATGATAGTTTTGATGGGTTTATAGAAGATGAGGATGGGGAAGAAATTCAACGGGTGACGAAATTTAATAGATCAAGGGCTAAAACTAAAACTGGCGTAAGGCGTCGGCAGGAAAATGCGAGTAAAAACTCGCAGAAGAGACAGAGGATTGCGTATGAAGAACaaccagaagaagaagaagaagaatgggatgaaaaagaagaggaggaagaagaagttgaagaagaagaagacgatgattatgatgatgtttATGAAGAAGAGGAGGAGGATGAGGAAGatgtaaaagaagaagaagaggaggaggaggaggaggaggaagaagtaaaagaagaagaagaggaggaagaagtaaaattagaagaaaaagaagtggAAGAGATAGATGGAAATGATGTGGACGGGGTAGATGGAAATTATGTGGACGAGGATTTCAGTTATGATGACGACGAATTTATACCGGAGGAAGAAGATTACACAGATGAGGACGAAGAACAAACAAGAGgcagaaagaagaaaaaggaggaTTTCAGTTATGAAGATGAGGAATTTATACCGACAGAAGAAGATTACACAgatgaggaggaagaagaaacaaggggcataaagaagaaaaataacgGCATGAAAATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCGACTTCTAGCAGAAGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGGCGAAAGAATGGCGGATCGAAGAGGAAAGTACagtgtgatgatgatgatgtagaTGATTTTTCGGACAATGGCCCAGCCATCAGAACAAATAGTAGAAAGACATCAGTCCAGAAAAGGAGAAGGGTTCTCCTTGAAGATGCCAATTCCGGTTCAGATTGTGAGGCTAGACAATCTGATTATGAGTTTACTAtctctgaagaagaaaaagaacagGTGAGAGAAGCCATGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAGTGCAAAATGAAGTGGTTGGAGTACATGAAGATCTACACCAGCAACGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACCTGAAAAGTGCTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTGTCTGaggaaaataaaagaagagTAAGGGGAGTACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAAGCGGTGATACAAGTGCCAGAACGTGATCAGGTTTATCAGCCCACTGAAGAAGAACTGAGGAGCTACATTGATCCATATGAGTCTGTTATTTGTTCAGAATGCCATCTAGGTGGAGATGATGGACTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGGTTGGGGCATGAAGTACCTGAAGGTAACTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCCGATTTAAGAGCGGCAACCCAAAGCTTGCCTTCCAGACCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACTTGATGTCTTCGCCTCACACATCTTTTAGCCAAGGGTTTGGCCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCCGAAGGAGCTTCTCCAATGTCTGGAGGTGGTGCACCGACCTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGCTACGTTCAATTGATAGAATGACTTCTACAAATGGCAGAATTAATGGTGTTCCGGCTACCAATATAATAAGTAATTTGCATAGCTCTGAAGTTGATCAAAGTAGGGAACCAAGTTCTCAACACCCAAGGACACAGGATGTAGGAACATCCTATCACACATTTTTCGAGGAGAGTTTAAGCAACAATATCTCTCCATTAATGCAGAATGGAGATCCCTTCTCCATAATAATGAGCAATTCAAGAAGACCAGTGATTCAGGATTCAACCATGTTTTCAAATGGGCCTGCGAATGCAGTTATGTGGCCTGGAATTTTGGGGGCACACACCTTATCAGATGATGGATCAATCCACCCGTGCAGCAGCAGATCAAACATTGTCACTGAGGATAGTATGCCCCTTACCATCAAAGAAGAAGATAACTTGCACATTGTAAAGGAGCAGTTGCAGTCAATAGTTAAAAGCCATCTTAAGAGATTGTCTCAAGATACTGATTTGGGTTATAGTACTTACAAGGACATTGCAAGGAGTTCGACGCATACCATACTCGCTGCTTGTGGACTCGAGCACAAGACGAGTGAGGTTTGTAATGTGCCTCCACCATCTGTCTGTCGCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTAAAGATTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGGATATTGGACAAAAGAATGTCTTCACAGTGGTTAAGATTAGGACTTTAG 2766 0.3774 MVKGGKFSRKGNLRKKVRSKGGGSEDDSDEDYVVSDDVGNVSDCPEDDCFSLDGCAPDDSFDGFIEDEDGEEIQRVTKFNRSRAKTKTGVRRRQENASKNSQKRQRIAYEEQPEEEEEEWDEKEEEEEEVEEEEDDDYDDVYEEEEEDEEDVKEEEEEEEEEEEEVKEEEEEEEVKLEEKEVEEIDGNDVDGVDGNYVDEDFSYDDDEFIPEEEDYTDEDEEQTRGRKKKKEDFSYEDEEFIPTEEDYTDEEEEETRGIKKKNNGMKMGKKKALKKRVSATSSRSRKRSGSRVSKKPKRKRRRKNGGSKRKVQCDDDDVDDFSDNGPAIRTNSRKTSVQKRRRVLLEDANSGSDCEARQSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRVQNEVVGVHEDLHQQRKPPARKGKEKIEESQGRKGKEKVEDLKSAEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGHEVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRQIQQLRSIDRMTSTNGRINGVPATNIISNLHSSEVDQSREPSSQHPRTQDVGTSYHTFFEESLSNNISPLMQNGDPFSIIMSNSRRPVIQDSTMFSNGPANAVMWPGILGAHTLSDDGSIHPCSSRSNIVTEDSMPLTIKEEDNLHIVKEQLQSIVKSHLKRLSQDTDLGYSTYKDIARSSTHTILAACGLEHKTSEVCNVPPPSVCRHIELIAGGQTSMIKDCCSSCFDSFVGDVVKRILDKRMSSQWLRLGL 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04421 921 ProSitePatterns Zinc finger RING-type signature. 465 474 IPR017907 -
Tsu07g04421 921 ProSiteProfiles Zinc finger PHD-type profile. 533 582 IPR019787 -
Tsu07g04421 921 SMART ring_2 446 487 IPR001841 -
Tsu07g04421 921 Coils Coil 138 188 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 221 237 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 403 432 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 1 340 - -
Tsu07g04421 921 Pfam PHD-finger 535 581 IPR019787 -
Tsu07g04421 921 SMART PHD_3 535 580 IPR001965 -
Tsu07g04421 921 CDD RING-HC_Topors 446 488 - -
Tsu07g04421 921 PANTHER F18C1.6 PROTEIN 133 909 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 89 111 - -
Tsu07g04421 921 SUPERFAMILY FYVE/PHD zinc finger 508 581 IPR011011 -
Tsu07g04421 921 Pfam Ring finger domain 445 488 IPR001841 -
Tsu07g04421 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 497 IPR013083 -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 112 220 - -
Tsu07g04421 921 Coils Coil 116 136 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 263 308 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 238 253 - -
Tsu07g04421 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 583 IPR013083 -
Tsu07g04421 921 SUPERFAMILY RING/U-box 445 494 - -
Tsu07g04421 921 ProSiteProfiles Zinc finger RING-type profile. 446 488 IPR001841 -
Tsu07g04421 921 PANTHER F18C1.6 PROTEIN 133 909 - -
Tsu07g04421 921 MobiDBLite consensus disorder prediction 639 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04421 Tsu-Chr7 49348666 49351935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04421 446 491 C3H Transcription Factor Family AT2G39100 45.652 1.28e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g04421 PHD 2.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04421 - - mtr:MTR_7g112410 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04421 07 49348666 49351935 Tsu07g04421 07 49348666 49351935 ECH