Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04419 ATGGGAATCATGGATCAAATGGAGAAGGAATGTTGTTCATACGATGAAATGGGTATGATCAAGAAATGTTGTGCTGATTGCAAAGCCACCAAGACTCCACTTTGGAGAGGAGGACCAAATGGACCCAAGACGTTGTGCAACGCTTGTGGAATTAGGTACAGAAAGAAAAGGGGTTCTTGTAATAACAAAGGACAAGAAAGGgaaaggaagagagagaaagcacaaaATGGGAGGAATCGTAGTAGTGATGATGATGGTAGTGGCAGTGATGGTGATTTGAATGAGTGTTTGAAAATGAAGTTAGTGGCTTTGGGTGAAGAGGTTTTATTGCATTCTGTTCTGAAGAAACAAAGGAGGATTAAATTAGGTGAAGAAGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGa 429 0.3869 MGIMDQMEKECCSYDEMGMIKKCCADCKATKTPLWRGGPNGPKTLCNACGIRYRKKRGSCNNKGQERERKREKAQNGRNRSSDDDGSGSDGDLNECLKMKLVALGEEVLLHSVLKKQRRIKLGEEEQAAVCLMALSCGFVFA 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04419 142 SMART GATA_3 18 70 IPR000679 GO:0006355|GO:0043565
Tsu07g04419 142 MobiDBLite consensus disorder prediction 57 91 - -
Tsu07g04419 142 Gene3D - 20 84 IPR013088 GO:0006355|GO:0008270
Tsu07g04419 142 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
Tsu07g04419 142 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Tsu07g04419 142 CDD ZnF_GATA 24 73 IPR000679 GO:0006355|GO:0043565
Tsu07g04419 142 PANTHER OS01G0976800 PROTEIN 4 142 - -
Tsu07g04419 142 PANTHER GATA TRANSCRIPTION FACTOR 16 4 142 - -
Tsu07g04419 142 MobiDBLite consensus disorder prediction 59 87 - -
Tsu07g04419 142 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Tsu07g04419 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04419 Tsu-Chr7 49329542 49331050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04419 5 142 C2C2-Gata Transcription Factor Family AT5G49300 48.551 2.01e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu07g04419 GATA 1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04419 - - lang:109330084 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04287 04 50987133 50988203 Tsu07g04419 07 49329542 49331050 ECH
Tsu07g04419 07 49329542 49331050 Tsu07g04419 07 49329542 49331050 ECH