LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g04418	ATGTCGTATCGTCCTAATGCAAACGCGAGGACCGAGGTCCGTCGGAATAGATACAAGGTGGCCGTTGATGCTGAAGAAGGTCGTAGACGGCGAGAGGATAATTTAGTTGAGATCCGTAAGAATCGTAGAGAAGAAAGCTTGCAGAAGAAAAGGCGCGAGGGACTTCAAGCTCAACAGATGCCTGAATCAGTTAACTCTACTCAAGTAGAGAAAAAGTTGGAACACATACCAGCCTTGGTTACTGGTATTTGGACTGATGATAATAACATGCAGTTCGAGGCAACAACGCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAGGAGGTTATACAAGCTGGTGTAGTTCCACGCTTTATTGAGTTTTTGATGAGGGAAGATTTTCCACAACTTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTAGTGATTGATTCTGGTGCTGTTCCAATTTTTGTAAAGCTCCTTGCTTCTCCTAGCGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGACTCTCCTAGATGTCGTGATCTTGTTCTCAGTCATGGAGCTTTGCTTCCTCTGTTGGCGCAACTGAATGAGCACGCCAAACTTTCTATGCTAAGAAACGCTACTTGGACGCTCTCAAACTTCTGCAGGGGGAAGCCACAACCTGCTTTTGATCAGGTTAAACCCGCGCTTCCTGCACTTGCCCAGCTCATCCATTCCAATGACGAAGAAGTCTTGACCGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGTGTAATTGATGCTGGTGTCTGTAGCCGGCTTGTCGAGCTTCTACTGCACCCATCTCCTTCTGTGCTTATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACCGGAGATGACATGCAGACACAGGTCATCATCAACCATCAAGTTCTCCCTTGTCTTATGAATCTCTTgactaataattataaaaagagcATCAAGAAGGAAGCATGTTGGACAATATCGAACATCACAGCTGGGAATAAACAACAGATTCagAATGTGATCGATGCCAATATAATTGGTCCTTTGGTCCAATTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCTTGGGCCATTTCAAACGCTACATCTGGTGGATCTCATGAACAACTCAAGTACCTGGTAAGCCAAGGGTGTATTAAGCCTTTGTGTGATCTTCTCATATGTCCCGATCCTAGGATTGTGACAGTTTGTCTTGAAGGGCTTGAAAACATCTTAAAGGTAGGAGAAGCTGATAAAAATGTCGGCAACACTGGTGATGAGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGATGATGAGGTTATGCCTCCAGGTGATGCTTCTCAACCAGGGTTCAACTTTGGTGGCTCTGAAATTCCTGCTGTGCCTTCGGGTGGATTTAACTTCAACTAG	1599	0.439	MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQAQQMPESVNSTQVEKKLEHIPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDSGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQVKPALPALAQLIHSNDEEVLTDACWALSYLSDGANDKIQGVIDAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQVLPCLMNLLTNNYKKSIKKEACWTISNITAGNKQQIQNVIDANIIGPLVQLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVGNTGDENLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEVMPPGDASQPGFNFGGSEIPAVPSGGFNFN	532

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu07g04418	532	SUPERFAMILY	ARM repeat	15	501	IPR016024	-
Tsu07g04418	532	MobiDBLite	consensus disorder prediction	43	68	-	-
Tsu07g04418	532	Pfam	Atypical Arm repeat	458	503	IPR032413	-
Tsu07g04418	532	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	160	202	IPR000225	GO:0005515
Tsu07g04418	532	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	117	160	IPR000225	GO:0005515
Tsu07g04418	532	Pfam	Armadillo/beta-catenin-like repeat	404	441	IPR000225	GO:0005515
Tsu07g04418	532	Pfam	Armadillo/beta-catenin-like repeat	245	272	IPR000225	GO:0005515
Tsu07g04418	532	Pfam	Armadillo/beta-catenin-like repeat	107	147	IPR000225	GO:0005515
Tsu07g04418	532	Pfam	Armadillo/beta-catenin-like repeat	282	314	IPR000225	GO:0005515
Tsu07g04418	532	Pfam	Armadillo/beta-catenin-like repeat	360	399	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g04418	Tsu-Chr7	49323304	49328524	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g04418	132	392	U-box Gene Family	AT3G46510	23.755	5.53e-11	63.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g04418	K15042		-	gmx:100789135	989.949

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g04418	07	49323304	49328524	Tsu01g03550	01	43446616	43450553	PCT

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