Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04418 ATGTCGTATCGTCCTAATGCAAACGCGAGGACCGAGGTCCGTCGGAATAGATACAAGGTGGCCGTTGATGCTGAAGAAGGTCGTAGACGGCGAGAGGATAATTTAGTTGAGATCCGTAAGAATCGTAGAGAAGAAAGCTTGCAGAAGAAAAGGCGCGAGGGACTTCAAGCTCAACAGATGCCTGAATCAGTTAACTCTACTCAAGTAGAGAAAAAGTTGGAACACATACCAGCCTTGGTTACTGGTATTTGGACTGATGATAATAACATGCAGTTCGAGGCAACAACGCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAGGAGGTTATACAAGCTGGTGTAGTTCCACGCTTTATTGAGTTTTTGATGAGGGAAGATTTTCCACAACTTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTAGTGATTGATTCTGGTGCTGTTCCAATTTTTGTAAAGCTCCTTGCTTCTCCTAGCGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGACTCTCCTAGATGTCGTGATCTTGTTCTCAGTCATGGAGCTTTGCTTCCTCTGTTGGCGCAACTGAATGAGCACGCCAAACTTTCTATGCTAAGAAACGCTACTTGGACGCTCTCAAACTTCTGCAGGGGGAAGCCACAACCTGCTTTTGATCAGGTTAAACCCGCGCTTCCTGCACTTGCCCAGCTCATCCATTCCAATGACGAAGAAGTCTTGACCGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGTGTAATTGATGCTGGTGTCTGTAGCCGGCTTGTCGAGCTTCTACTGCACCCATCTCCTTCTGTGCTTATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACCGGAGATGACATGCAGACACAGGTCATCATCAACCATCAAGTTCTCCCTTGTCTTATGAATCTCTTgactaataattataaaaagagcATCAAGAAGGAAGCATGTTGGACAATATCGAACATCACAGCTGGGAATAAACAACAGATTCagAATGTGATCGATGCCAATATAATTGGTCCTTTGGTCCAATTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCTTGGGCCATTTCAAACGCTACATCTGGTGGATCTCATGAACAACTCAAGTACCTGGTAAGCCAAGGGTGTATTAAGCCTTTGTGTGATCTTCTCATATGTCCCGATCCTAGGATTGTGACAGTTTGTCTTGAAGGGCTTGAAAACATCTTAAAGGTAGGAGAAGCTGATAAAAATGTCGGCAACACTGGTGATGAGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGATGATGAGGTTATGCCTCCAGGTGATGCTTCTCAACCAGGGTTCAACTTTGGTGGCTCTGAAATTCCTGCTGTGCCTTCGGGTGGATTTAACTTCAACTAG 1599 0.439 MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQAQQMPESVNSTQVEKKLEHIPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDSGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQVKPALPALAQLIHSNDEEVLTDACWALSYLSDGANDKIQGVIDAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQVLPCLMNLLTNNYKKSIKKEACWTISNITAGNKQQIQNVIDANIIGPLVQLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVGNTGDENLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEVMPPGDASQPGFNFGGSEIPAVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04418 532 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Tsu07g04418 532 MobiDBLite consensus disorder prediction 43 68 - -
Tsu07g04418 532 Pfam Atypical Arm repeat 458 503 IPR032413 -
Tsu07g04418 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Tsu07g04418 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 282 314 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Tsu07g04418 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Tsu07g04418 532 Gene3D - 74 497 IPR011989 -
Tsu07g04418 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Tsu07g04418 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Tsu07g04418 532 PANTHER IMPORTIN ALPHA 2 522 - -
Tsu07g04418 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tsu07g04418 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 272 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 234 273 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 106 147 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 360 400 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 275 315 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 317 358 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 190 232 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 149 189 IPR000225 GO:0005515
Tsu07g04418 532 SMART arm_5 403 443 IPR000225 GO:0005515
Tsu07g04418 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Tsu07g04418 532 Gene3D - 13 52 IPR036975 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04418 Tsu-Chr7 49323304 49328524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04418 132 392 U-box Gene Family AT3G46510 23.755 5.53e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04418 K15042 - gmx:100789135 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04418 07 49323304 49328524 Tsu01g03550 01 43446616 43450553 PCT