Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04417 ATGGATCGAGAAGGAGGTGGATCCAACGGTGGATCTTCTTATTACTCTGTTCTTGGTATTCGCAGTGACGCCTCCTCCTCTGATATTCGCACTGCTTACCGCAAACTCGCTATGAGATGGCACCCTGATAAATTTGCTCGGAACCCTAACACTGCCGGAGAAGCCAAACGACGGTTTCAGCAAATTCAAGAAGCATACTCAGTTCTCTCTGATGAGTCTAAGAGATCAATGTACGATGCTGGATTATACGATCctcttgaagaagaagatgaagaattttgtgattttatgAGCGAAATGATCTCAATGATGAACAATGTCAAAGATGAGGTATTGATTTga 342 0.3918 MDREGGGSNGGSSYYSVLGIRSDASSSDIRTAYRKLAMRWHPDKFARNPNTAGEAKRRFQQIQEAYSVLSDESKRSMYDAGLYDPLEEEDEEFCDFMSEMISMMNNVKDEVLI 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04417 113 PRINTS DnaJ domain signature 33 48 IPR001623 -
Tsu07g04417 113 PRINTS DnaJ domain signature 54 74 IPR001623 -
Tsu07g04417 113 PRINTS DnaJ domain signature 15 33 IPR001623 -
Tsu07g04417 113 SUPERFAMILY Chaperone J-domain 13 85 IPR036869 -
Tsu07g04417 113 SMART dnaj_3 12 74 IPR001623 -
Tsu07g04417 113 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Tsu07g04417 113 PANTHER PUTATIVE, EXPRESSED-RELATED 12 110 - -
Tsu07g04417 113 CDD DnaJ 17 71 IPR001623 -
Tsu07g04417 113 PANTHER PUTATIVE, EXPRESSED-RELATED 12 110 - -
Tsu07g04417 113 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Tsu07g04417 113 Pfam DnaJ domain 14 79 IPR001623 -
Tsu07g04417 113 Gene3D DnaJ domain 2 103 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04417 Tsu-Chr7 49318209 49319308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04417 14 80 C2H2 Transcription Factor Family AT1G74250 42.647 6.09e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04417 - - mtr:MTR_7g112360 205.297