LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g04406	ATGGTATCAGATAGGCAAAAGGAGTACAAAGGCACTGATAAAATTCCTATTCCTATTCATAGGTCTAAATGGAATCATGGTGGTACAAAACAACCACCAATCAGTGGCCTTGGATTTGTGATAAACACTCTAAGGGCTAACAGTAACGGTTCCATCTACTTGGAAAATTTCATTCGAGAATTGGTAAGAGATGTGGTGGAAAGAAAAGTCCAAGAGCACATACATTCAAGTGAAAAGGTTAATGATGCTGGGATAATATCTGGAGCCAGACCCTTAGAgttgtgttttataaataatcaCAAGTTACCTGATACAGTTTTTACTAAATCTAGCATAATATCAAAGGATGAACCTCTTCAAATTGCTCTAGTTGATGTTAGATCTAAGTCAATAGTCAATGAAGGTTCCTTATCTTCAACAAAGATAGAGATTTGTGCACTTGATGGTGAATTTGGATCTTGTGGCAGTGATGATTGGACTGAAACTCAATTCAAGGATAATATCTTGCGCGAAAGAGATGGAAAAGAGCCACTATTGGTTGGGAATCACAGGATTATTACTCTTGAGAATGGAGTTGCTTCCATCTCTAAAATTATGTTTACTGATAATTCAAAATGGTTAAGAAGCAAAAAGTTCAGGTTAGGAGTTAAAGCTATACAAAATGGAGAAAAGATTAAGGAAGGTAGAAGTCAACCTTTTAGGGTCAAAGATAACAGAGGAGAAGCCTACAAGAAACATTACCCTCCATATTTGAATGATGATGTTTGGCGTTTGGAGAAAATTGCTAAAGATGGAGAATTCCACAAGAGGCTCTCTAACCATGGAATTCATACTGTTAAGGATCTCTTGAAGTTACTCATAATCAATGAATCTTCATTACATAAGATGTTTGGCAAGATTCCGAAGAAGTCTTGGTTAGCAGTTATCGAACATGCCAAGTCGTGTGTCGTAAATGATTACAAGCTTTATAGCTATAGCTATTGGATACATGGACAACTAATAATGCTGATATTCAATGCCATCTACGAACTTGTGGGAGTAACAAATGATGCACAAAATTACTATTTACCAGAGACTCTCATACCCAGCTTGAAGAATATTGTAGAAAAAGCGAAGCAGGATGCTTACAAAAATTTGGTACCAATCGATGAAGCTCAATTGAACTCTATAAGCCTAGCAGCATGTTTAAAATCAGCAGCACAATCAGATGCTCCTGCTCAAGGTCTGCAGCATATTGATATCTCTAATGCACAAGGTCAAAAAGAAACAGGACCAAGTTACGTTCAACCATGTACCTCTACTTCTTATGCTAATCAAGGAATGAATAATTGCCAAATCAATGTTGATTCAGTGCCAATGCCAAACATAAGAGAAATACCACAAAACAATCACGTGGAAGGTGAAATATACAATGAAGAAGATAATTATGAATCACAAGTTCCAGTTGCACAAGATGGAGTTTGGAGTTCACTCATGAATGATATTTGGAGTTCagaaaatgacattttatttgATCATTTTGATGGAGCAGTATGTAGCACCCATGTTAATTTCGTCAGTTCTGTTACGGATATACCAAACAATGGGAAACCAAAAGCAGATTGGTGTAAGATTCGCGCTGTTATAAAATGGGGAATATCAGTGAGAAAGGTTGCAGCTGCCAAAAGGAATTACTAG	1677	0.362	MVSDRQKEYKGTDKIPIPIHRSKWNHGGTKQPPISGLGFVINTLRANSNGSIYLENFIRELVRDVVERKVQEHIHSSEKVNDAGIISGARPLELCFINNHKLPDTVFTKSSIISKDEPLQIALVDVRSKSIVNEGSLSSTKIEICALDGEFGSCGSDDWTETQFKDNILRERDGKEPLLVGNHRIITLENGVASISKIMFTDNSKWLRSKKFRLGVKAIQNGEKIKEGRSQPFRVKDNRGEAYKKHYPPYLNDDVWRLEKIAKDGEFHKRLSNHGIHTVKDLLKLLIINESSLHKMFGKIPKKSWLAVIEHAKSCVVNDYKLYSYSYWIHGQLIMLIFNAIYELVGVTNDAQNYYLPETLIPSLKNIVEKAKQDAYKNLVPIDEAQLNSISLAACLKSAAQSDAPAQGLQHIDISNAQGQKETGPSYVQPCTSTSYANQGMNNCQINVDSVPMPNIREIPQNNHVEGEIYNEEDNYESQVPVAQDGVWSSLMNDIWSSENDILFDHFDGAVCSTHVNFVSSVTDIPNNGKPKADWCKIRAVIKWGISVRKVAAAKRNY	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g04406	558	Pfam	Calmodulin binding protein central domain	251	315	IPR046830	-
	Tsu07g04406	558	Pfam	Calmodulin binding protein C-terminal domain	321	379	IPR046829	-
	Tsu07g04406	558	Pfam	Calmodulin binding protein-like N-terminal domain	92	238	IPR046831	-
	Tsu07g04406	558	PANTHER	OS02G0177800 PROTEIN	1	556	IPR012416	GO:0005516
	Tsu07g04406	558	PANTHER	CALMODULIN-BINDING PROTEIN	1	556	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g04406	Tsu-Chr7	49239129	49242659	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g04406	45	418	Calmodulin-binding Proteins	AT5G26920	37.949	2.83e-72	235

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g04406	-		-	mtr:MTR_7g112000	627.861