Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04375 ATGGATTATCGATGGACCAAAGGTAAGCATGAATCTGGTAGTTCCCGTGACAGGAAGCAATTGAAAAAGGATCGGGTTTATGAGGAATCTCTTATTGATGATTTGTCTGAGGATTTTCGCTTGCCGAGAAATCAAAGACCAACTGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTTGATACACAAATAACTTCATCTAATATTGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAgGAATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGATTGGtaaacaagaagaagatgatttttTCACTGCAGAAGAAAATGTCCAGCGAAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGGAAGCGGGAGGTGTTAGCTGAACGTGagcaaaaaattcaaactgAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGGAAGCGTTTCAAAGAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAACTGGCCAAGTTTGCTCAAATTGCTGATGCTCATAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGTTTCCTCCGAATCTAGGACTGCTACTGCACTGACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGagTTCGGTTGGTTCAAAGAAGCCAAATGTTCCAAAGAAACCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA 924 0.4048 MDYRWTKGKHESGSSRDRKQLKKDRVYEESLIDDLSEDFRLPRNQRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGIGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAHKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSAKGTAFKSSVGSKKPNVPKKPNVPVASIFGNDSDEE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04375 307 MobiDBLite consensus disorder prediction 232 261 - -
Tsu07g04375 307 Coils Coil 117 144 - -
Tsu07g04375 307 SMART G-patch_5 65 110 IPR000467 GO:0003676
Tsu07g04375 307 ProSiteProfiles G-patch domain profile. 67 112 IPR000467 GO:0003676
Tsu07g04375 307 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 307 - -
Tsu07g04375 307 MobiDBLite consensus disorder prediction 277 307 - -
Tsu07g04375 307 SUPERFAMILY beta-beta-alpha zinc fingers 143 197 IPR036236 -
Tsu07g04375 307 Pfam Zinc-finger double-stranded RNA-binding 162 189 IPR022755 -
Tsu07g04375 307 MobiDBLite consensus disorder prediction 195 219 - -
Tsu07g04375 307 Pfam G-patch domain 68 108 IPR000467 GO:0003676
Tsu07g04375 307 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Tsu07g04375 307 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04375 Tsu-Chr7 49024557 49028531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04375 1 307 C2H2 Transcription Factor Family AT5G26610 64.610 6.05e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04375 - - mtr:MTR_7g111520 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04375 07 49024557 49028531 Tsu07g04375 07 49024557 49028531 ECH