Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04370 ATGCCTCTGCATGAATTATACCACATGTCTAAAGAAAAAGTTGATCATAAAGAGATGAACAATTCTTCTGCACATGATCAATCTTCTGTACCCAAAAATGATTTGTTTGAGCTGGTTTTGGAAAATGGTCAGATTTCAGTGCAGGGTCAATCTAGTTCCATTTCCAATAGAGGTAAAAAGAGTTCAACTTGTAAGAGTTTGCCATCTCATACTATTAGGGGTCATGGTAAAGATATAGGACAACATGGTAATGAAACAAATACAAGGATGAAAAAGTTTGAGGATTTAGATAAGGGTAATTTGAATGAAATTCTTACAAGGCCTGTTTCTTCGAATCATGATGAAGATGTGATGATGCCTTGGTTGAATTATGCAATGGATGAACACTCTTTACAACATGACTATAATTATAGTTTCTTACATGAACTTTCTGGAGTCAACACAAATGACTTTCCTGCTTCGAATAAATTTTCTTTGCTTGATAGAGAAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGGATTCTTTGCAAGGGTTCTTCAGTTGCAGCTGCAACTGAAGAATTTGAGACATTTGGACTAAGAAATAGCACCAATCAGTTACACACGGTGTCACGGTTGCATCAATGTCAACCATCACTTGAAAATGATTCAAAAAGTAATGCAAATCAGCATGCACCCTGTGAAGAAATCTCTCATATTCCATCTTCATCAACCATAATGAATTTCACCCATTTTGCTAAACCTGTTGCTATTGTGAAGGCTAATCTTCACAACATTGGTTTGTCTTCATCAAGATCAGAAAATTTAGGAATAAAGAACAAAGATGAAGCTGCAATAAATATCAGTCCTTTTGAATCAACAAAAGTTGATTTAAGTGGAGATTGTCCAAAACATTCTGCCATACACTGTCGTCATGCTGTGGAATCATCCAGGGTTGATTCGAAATCTTTGGAGCCGAAATCTCTTGAGAAAAATGCTGGTGTTTCTGTGCCTGCTTGCAAAGaagatgatgttctttgtgagAGTGGCAGAAAAGGTCAAGAAGCTGTTGAAAAATGTATGGAGCAAACAGTAGTCACTTCCTCTGTTTGCTCTGACAATGGTGCATATAGAGGTTCAGatgacacaaataaaaatttgaagcGAAAAAATCTAGACTCTGAGGATTCTGAGTGGAATAGTGAAGATGTTGAGGATGAATCAATTATTGGTGTTAAAAGGACAGCTCATGGACGAGGAGGTATCGGCTCGAAGAGAAACCGTTCAGCTGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGATAGGATAAACGAGAAGATGCGCACGTTGCAAGAGCTCATACCGAATTGCAATAAGGCAGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACGCTTCAATTCCAACTGCAAATTATGTCAATGGGAGGTGGTGGTTTATACATGCCTATGATGTTACCTGCAGGAATGCAACACATGCATGCAGCACACATATCTCCTTTTTCCCCGATGAATATTGGCATGCAAATGGGGTTGGGGGTGCCTCAACTTCAAGGAACTCACCTTCCTGTTGTGCATACATCTGGACTTGCTGCTTTACAAGGGATGTCTAGACCAAATCATCAAATGTTTGGGAATAACCTCGGAACTCATCTACCAATGCAATGTGCTCCAATGTTTTCTTACCCCGGGGAGTCTGTTATGAACTCATCAGCTGTAGGATTAAATCCCAGTGGAACAACAGGACTAATGGAAACTGTGGAGTTGGTTTCAACACCTAAGTTAATGGATCCAATGCCAAATGTGAACTCACAAGTTATGCAAAACCACAATGGATGTAACTCAACAAATCAAATGTCTATCCAGGGTAAGGGTGAAACAAGAACTGATGGACTCGAACAATCAAATTTGATAATTGATAGTGGTCATGCCTTGTCGATAAATGACAAAGGAGCTGTTAATCCTGGTAAAGAAGACAACCTTGTGTTGGATAAATCTCACGAGTAA 2031 0.3796 MPLHELYHMSKEKVDHKEMNNSSAHDQSSVPKNDLFELVLENGQISVQGQSSSISNRGKKSSTCKSLPSHTIRGHGKDIGQHGNETNTRMKKFEDLDKGNLNEILTRPVSSNHDEDVMMPWLNYAMDEHSLQHDYNYSFLHELSGVNTNDFPASNKFSLLDRESNCIQVFSDSHKQGILCKGSSVAAATEEFETFGLRNSTNQLHTVSRLHQCQPSLENDSKSNANQHAPCEEISHIPSSSTIMNFTHFAKPVAIVKANLHNIGLSSSRSENLGIKNKDEAAINISPFESTKVDLSGDCPKHSAIHCRHAVESSRVDSKSLEPKSLEKNAGVSVPACKEDDVLCESGRKGQEAVEKCMEQTVVTSSVCSDNGAYRGSDDTNKNLKRKNLDSEDSEWNSEDVEDESIIGVKRTAHGRGGIGSKRNRSAEVHNLSERRRRDRINEKMRTLQELIPNCNKADKASMLDEAIEYLKTLQFQLQIMSMGGGGLYMPMMLPAGMQHMHAAHISPFSPMNIGMQMGLGVPQLQGTHLPVVHTSGLAALQGMSRPNHQMFGNNLGTHLPMQCAPMFSYPGESVMNSSAVGLNPSGTTGLMETVELVSTPKLMDPMPNVNSQVMQNHNGCNSTNQMSIQGKGETRTDGLEQSNLIIDSGHALSINDKGAVNPGKEDNLVLDKSHE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04370 676 MobiDBLite consensus disorder prediction 48 69 - -
Tsu07g04370 676 MobiDBLite consensus disorder prediction 1 30 - -
Tsu07g04370 676 PANTHER TRANSCRIPTION FACTOR PIF3 1 628 - -
Tsu07g04370 676 MobiDBLite consensus disorder prediction 657 676 - -
Tsu07g04370 676 Gene3D - 420 482 IPR036638 GO:0046983
Tsu07g04370 676 Pfam Helix-loop-helix DNA-binding domain 429 475 IPR011598 GO:0046983
Tsu07g04370 676 CDD bHLH_AtPIF_like 425 486 - -
Tsu07g04370 676 SMART finulus 431 480 IPR011598 GO:0046983
Tsu07g04370 676 MobiDBLite consensus disorder prediction 48 85 - -
Tsu07g04370 676 PANTHER TRANSCRIPTION FACTOR PIF3 1 628 IPR044273 GO:0003700|GO:0006355
Tsu07g04370 676 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 425 474 IPR011598 GO:0046983
Tsu07g04370 676 MobiDBLite consensus disorder prediction 71 85 - -
Tsu07g04370 676 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 422 493 IPR036638 GO:0046983
Tsu07g04370 676 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04370 Tsu-Chr7 48975628 48979391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04370 1 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.911 2.26e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g04370 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04370 K12126 - gmx:100794974 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04370 07 48975628 48979391 Tsu07g04370 07 48975628 48979391 ECH