Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04369 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTTCGTAAAGGTCTTTGGTCtcctgaagaagatgaaaagctTTTGAATTACATAACCAAACATGGTCATGGATGTTGGAGTTCAGTTCCAAAACTAGCTGGTTTGCAGAGATGTGGTAAGAGCTGTAGATTGAGATGGATAAATTATCTTAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAAAATTCCATAATTGAACTTCATGCACTCCTTGGCAACAGGTGGTCTCAAATTGCGGCACAGTTACCGGGAAGAACagataatgaaataaaaaatttatggaattCAAGTTTAAAGAAGAAGCTTAGACAAAAAGGAATTGATCCAAACACACACCAACCACTATGTGAATTAGCTGAGATCAATGACAAGGACAAGCAATTACCTATGGATGACAAAAGCATTATTCAGAAAACCTCTGTGGGATCCAATGAAGTGAAGAATCTTTTTGATGACACACCAAATCCAAATTCTATTCCTATAGATAATTGCAATTATCCActtgaaattttttcttcaacttcaaaAATCAACAATTGCTTCATACCTTCTTCTGATCATATGGTTGGATTAGGAGGAGGTTCATATCTCTCTTTTCAACAACTTAACTATGGAATCAATAACATAGCTCTATCTCCAAATTCCAACAACAATTCACTTTGTTTCATACCAAGTACTAGTGGTTCTCAAATGATGTCAGAACTCAATTCTTCAACCATGTACCATTCTATGTTCCAACAAACACCAAACACAAAACATATAAATCCTTCAAACTCTATATCCTCGGGCGATGTCGATGGGATTCAAAACTGGGAATTcagtaacaacaacaacaacaatcaccATCAAGTTATAGAAGACATTAAATGGTCTGAATATTTAAACAGTACTACACCATTTTTTCAACAGCATCAAAGTACAATGATCTACAATGATAATGAGGTTAAACAAGAAATGGGATTCATTAATAATAGAGATGAATCAATTCAATCAAGTAGTACTATATGGAATCATAGTAATAGTCACCATCATCAGCAACATATTGAAGGTGCTAATTCAGATCATATATATAGCAACAAAGATCTTCAAAGATTCTCACTGGCATTTGGACAAACACTTTAG 1164 0.3239 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQKGIDPNTHQPLCELAEINDKDKQLPMDDKSIIQKTSVGSNEVKNLFDDTPNPNSIPIDNCNYPLEIFSSTSKINNCFIPSSDHMVGLGGGSYLSFQQLNYGINNIALSPNSNNNSLCFIPSTSGSQMMSELNSSTMYHSMFQQTPNTKHINPSNSISSGDVDGIQNWEFSNNNNNNHHQVIEDIKWSEYLNSTTPFFQQHQSTMIYNDNEVKQEMGFINNRDESIQSSSTIWNHSNSHHHQQHIEGANSDHIYSNKDLQRFSLAFGQTL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04369 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g04369 387 Gene3D - 11 67 - -
Tsu07g04369 387 CDD SANT 69 112 IPR001005 -
Tsu07g04369 387 CDD SANT 17 61 IPR001005 -
Tsu07g04369 387 SMART sant 66 114 IPR001005 -
Tsu07g04369 387 SMART sant 13 63 IPR001005 -
Tsu07g04369 387 PANTHER HOMEODOMAIN-RELATED 1 294 - -
Tsu07g04369 387 Gene3D - 68 141 - -
Tsu07g04369 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu07g04369 387 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu07g04369 387 PANTHER MYB DOMAIN PROTEIN 55 1 294 - -
Tsu07g04369 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu07g04369 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g04369 387 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Tsu07g04369 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04369 Tsu-Chr7 48960800 48962375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04369 1 387 MYB Transcription Factor Family AT1G09540 44.286 2.61e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g04369 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04369 K09422 - gmx:778182 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03621 01 44036536 44038006 Tsu07g04369 07 48960800 48962375 ECH
Tsu01g03654 01 44305074 44306650 Tsu07g04369 07 48960800 48962375 ECH
Tsu07g04369 07 48960800 48962375 Tsu07g04369 07 48960800 48962375 ECH
Tsu07g04369 07 48960800 48962375 Tsu01g03621 01 44036536 44038006 PCT