Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04359 ATGGCTTCCATAACTGTAATCGGTGCTTCCTCAGCATATAAACTTCCCTCTCTCGAACCACACAAGAAAAAACAACTAAATTCCACCGTTAAATTCCACTCTCTCGACACCAACAAATCCCGCCACACTCTCCTCAGACATAACCGTCTCGCCAATTTCAACTCCTCCGATAGGTTTATTCCTTCCGCCGTTGCTACTCCaaattcttcctcttcttcactTCTTAGTGACGAAGCATTTCAAGGATTAGGACCTGGTTTTGACGGTGATGAAGAAGACGATGATTTTCCTTCACGAACTGCTTCTATTAGTTCCGATGAACTTGACATTTCTAAACTCGATTTGCCTTCGCAACTTGTTGATTCACTTCGTAAACGTGGGATTACCGAGCTTTTTCCTATTCAGAGAGCTGTGTTAGTACCTGCACTACAAGGTAGAGATATTATTGCTCGTGCAAAGACTGGAACAGGGAAAACACTGGCTTTTGGAATACCTATTATTAATGGCCTCGATGATGGTGAAGGTCCAGGTCGTTATAATAGCAGGCGTCTTCCTAGAGCCTTGGTCCTTGCACCTACCAGGGAATTAGCGAAGCAAGTAGAGAAGGAGATACAAGAATCTGCGCCCTATCTCAAAACAGTTTGTGTTTATGGAGGTGTTTCTTATATTAGTCAACAGAGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACTCCCGGTAGGCTGATTGACCTCATCAATGGGAGCACACTTAGGTTGAATGAAGTTGAGTATTTGGTACTTGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTGGAAAAGCTTCCACCTAAGAGACAAAGCATGCTTTTTTCTGCAACCATGCCTACATGGGTCAAAAAATTGGCCAGGAAATATTTGAACAATCCGTTGACTATTGATTTGgTTGGCGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTGCCACTTCAAAGCGAACAATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCGTTGGCATTAACAAATAGTATCACTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTACGAGCTTCCAAATGATCCCGAGACTTTTGTACATCGTTCTGGTCGTACTGGCCGTGCAGGAAAGCTAGGTAGTGCCATTCTGATGTACACAGGTAGCCAGAGGAGAACAGTTAGATCACTTGAGCGCGACGTAGGatgcaaatttgaatttgttaaCGCACCGTCTATGGAAGATGTTTTGGAAGCATCTGCTGAGCAAGTTGCTGTCACGCTTAATAGAGTTCATCCCGAGTCTATTGCATTTTTCACTCCAACTGCAGAGAAACTGATTGAAGAAAAAGGAACAACTGCACTTGCAGCTGCACTGGCACAACTGAGTGGATTCTCCCAACCTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGTAAGATCAGTGACCGGGTTTCTTTCTGATGTATATTCCAAAGCTGCCGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTTGTATCCTAGTTGAATTCGTTTCTATGCTTGTCTTTCTTGGAACTTCAGTGTTATAG 1857 0.4173 MASITVIGASSAYKLPSLEPHKKKQLNSTVKFHSLDTNKSRHTLLRHNRLANFNSSDRFIPSAVATPNSSSSSLLSDEAFQGLGPGFDGDEEDDDFPSRTASISSDELDISKLDLPSQLVDSLRKRGITELFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEGPGRYNSRRLPRALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYISQQSALSRGVDVVVGTPGRLIDLINGSTLRLNEVEYLVLDEADQMLAVGFEEDVEVILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGSQRRTVRSLERDVGCKFEFVNAPSMEDVLEASAEQVAVTLNRVHPESIAFFTPTAEKLIEEKGTTALAAALAQLSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSVRSVTGFLSDVYSKAADEVGKIHLIADERVCILVEFVSMLVFLGTSVL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04359 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Tsu07g04359 618 Pfam GUCT (NUC152) domain 536 600 IPR012562 GO:0003723|GO:0004386|GO:0005524
Tsu07g04359 618 CDD DEADc 119 316 - -
Tsu07g04359 618 CDD SF2_C_DEAD 329 458 - -
Tsu07g04359 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 315 IPR014001 -
Tsu07g04359 618 SMART helicmild6 369 449 IPR001650 -
Tsu07g04359 618 Pfam DEAD/DEAH box helicase 132 304 IPR011545 GO:0003676|GO:0005524
Tsu07g04359 618 SMART ultradead3 127 332 IPR014001 -
Tsu07g04359 618 Gene3D - 109 319 IPR027417 -
Tsu07g04359 618 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 45 600 - -
Tsu07g04359 618 Pfam Helicase conserved C-terminal domain 341 449 IPR001650 -
Tsu07g04359 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 470 IPR027417 -
Tsu07g04359 618 Gene3D - 331 533 IPR027417 -
Tsu07g04359 618 PANTHER - 45 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04359 Tsu-Chr7 48858053 48863768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04359 89 471 Eukaryotic Initiation Factors Gene Family AT1G72730 36.176 2.56e-66 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04359 - - gmx:100789516 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03634 01 44172050 44177233 Tsu07g04359 07 48858053 48863768 ECH
Tsu07g04359 07 48858053 48863768 Tsu07g04359 07 48858053 48863768 ECH
Tsu07g04359 07 48858053 48863768 Tsu01g03634 01 44172050 44177233 PCT