Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04355 ATGCCTGGTTTAGCTAACTCTACTCAAGTAGATAAAAAGTTGGAACACCTACCAGCCTTGGTTACTGATATTTGGACCGATGATAATAACATGCAGTTCAAAGCGACAACTCAGTTTCGGAAGTTGCTATCAATTGAACCTAACACACCAATTGAGGAGGTTATACAAGCCGGTGTTGTTCCACGCTTTATTGAGTTCTTGATGAGGGAAGATTTTCCACAGCTTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGACAACACCAAGGTAGTGATTGATTTTGGGGCTGTTCCAATCTTTGtaaagcttcttgcttctcctAGTGATGATGTCCGTGAACAGGCCGTGTGTGCATTAGGAAATGTTGCTAGTGACTTTCCTAGATGCCGTGATCTTGTTCTCAGTCATGGAGCTTTGCCTCCTCTGTTGGCGCAACTGAATGAGCACACCAAACTGTCTATGCTCAGAATTGCTACTTTGGCGCTCTCAAATTTTTGCAGGGGGATGCCACGACCTGCTTTTGATCAGGTTGCAGCCATGCTTCCTGCACTTGCCTGGCTCATCCGTTCAAATGATGAAAAAGTCTTGACCCATGCCTGTTGGGCACTTGCATATCTTTCTGATGGCGCAAAAGACAAACTTCAAGGTGTAATTGTTGCTGGTGTCTGTAGCCGACTAGTTGAACTACTGCACCACCCATCTCCTTCTGTGCTTATTTCTGCTGTTGGTACAGTTGGAAATATTGTCGCTATTCAGACCCAGGTCTTCATCGACCATCAAGTTCTTCCTTCTCTTATGAATCTCTTGACTAATAATTATGAAAAGAGCATCAAGGTGGAAGCATGTCGGATAATATCGAACATCACAGCTGCTGGGAATAAACAACATATTCagGATGTGATTGATGCTAATATAATTAGTCCTTTGGTCGAATTGCTTCAAAATGCTGAGTTTGATATCCAGAAGGAAGCTGCTTGGGCCATTTCAAACGCTACATATAGTGAATCTCTTGAACAACTCAGGTACCTGGCAAGTCAAGGGTGTATTAAGCCCTTGCGTGATCTTCTCATATGTCGCAATCCTTGGATTGTGACACATTGTCTTGAAGGGCTTGAAAACTTGTTAAAGGTAGCCAAACCTGATGAAGATTTAGCCAACACTAGTTATATGAATCCCGATGAAGATTTAGCCAACACTAGTTATATGGATCTTTTTgccgaaaaaattcaaaacctcAAGAGTCACGACAACACTGAGATTCTGGctttatcCGCTTCgAACGTTGAGGCGGAAAAAGATCAGCTTACTGAACTCAAGCTTAATTCTCATATCCTTCAGGAATCTATTACTAAACAGATTAACGAAAACCCAGTGGCAGGATGGGAGGCTGCTATTAATCCTCGCTTCTCCAATTATACAGTTCGACAATTTAAGCGCCTCCTTGGAGTCAAGCAAACGGCTGGGAATGAATTGAGTAGTATACCTGTTGTAACTCATCCAAAATCATTAAAATTGCCAAAGGAGTTTGATGCAAGGACAGCTTGGTCGCATTCTTATCTGATCCTTGTGCTATTGCTGATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCGTTATCAGATCGTTTTTGCGTTCATTTTGGCATGAATGTATCCCTATCTGTTAATGACATTCTTTCATGCTGTGGCCTTCTTTGTGGGGCTGGCTGTTCTGGGGGGACTCCCTTTTCTGCATGGATATACTTAGCTAACCATGGTGTTGTCACTGAAGAGTGTGATCCATACTTTGATCAAATTGGATGTACTCATCCAGGTTGTGAGCCAACTTATCGAACTCCAAAGTGCGTTAAAAAGTGTGTAAATGGGAACCAGCTTTGGGAGACGTCAAAGCACTATTGTGTCAAAGCATATACGGTCAACTCTGATCCCCAAGATATCATGGCGGAAGTTTATAAGAACGGTCCAGTTGAAGTTGCATTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAGCACATCACAGGTTCTCCACTAGGCGGTCACGCAGTAAAACTGATCGGATGGGGAACAAGTGAAGAAGGGGAGGACTATTGGCTTCTTGCGAATCAGTGGAATACAAACTGGGGCGATGATGGTTACTTTAAGATCAAGAGAGGGACAAATGAATGTGGGATTGAAAATGCTGTTACTGCTGGCTTGCCTTCTATCAAAAATATTGTGAGAGAGGTGATTGACATGGATGCTGATGCTGATCTTTCATTCTGA 2310 0.4186 MPGLANSTQVDKKLEHLPALVTDIWTDDNNMQFKATTQFRKLLSIEPNTPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSDNTKVVIDFGAVPIFVKLLASPSDDVREQAVCALGNVASDFPRCRDLVLSHGALPPLLAQLNEHTKLSMLRIATLALSNFCRGMPRPAFDQVAAMLPALAWLIRSNDEKVLTHACWALAYLSDGAKDKLQGVIVAGVCSRLVELLHHPSPSVLISAVGTVGNIVAIQTQVFIDHQVLPSLMNLLTNNYEKSIKVEACRIISNITAAGNKQHIQDVIDANIISPLVELLQNAEFDIQKEAAWAISNATYSESLEQLRYLASQGCIKPLRDLLICRNPWIVTHCLEGLENLLKVAKPDEDLANTSYMNPDEDLANTSYMDLFAEKIQNLKSHDNTEILALSASNVEAEKDQLTELKLNSHILQESITKQINENPVAGWEAAINPRFSNYTVRQFKRLLGVKQTAGNELSSIPVVTHPKSLKLPKEFDARTAWSHSYLILVLLLMIQGHCGSCWAFGAVESLSDRFCVHFGMNVSLSVNDILSCCGLLCGAGCSGGTPFSAWIYLANHGVVTEECDPYFDQIGCTHPGCEPTYRTPKCVKKCVNGNQLWETSKHYCVKAYTVNSDPQDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGSPLGGHAVKLIGWGTSEEGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIENAVTAGLPSIKNIVREVIDMDADADLSF 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04355 769 Pfam Peptidase family C1 propeptide 451 492 IPR012599 GO:0004197|GO:0050790
Tsu07g04355 769 Pfam Papain family cysteine protease 511 746 IPR000668 GO:0006508|GO:0008234
Tsu07g04355 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Tsu07g04355 769 PANTHER IMPORTIN ALPHA 7 428 - -
Tsu07g04355 769 SMART arm_5 47 88 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 216 256 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 174 214 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 342 382 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 258 296 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 90 130 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 299 339 IPR000225 GO:0005515
Tsu07g04355 769 SMART arm_5 132 173 IPR000225 GO:0005515
Tsu07g04355 769 SUPERFAMILY ARM repeat 6 430 IPR016024 -
Tsu07g04355 769 Gene3D Cysteine proteinases 441 755 - -
Tsu07g04355 769 Pfam Armadillo/beta-catenin-like repeat 223 255 IPR000225 GO:0005515
Tsu07g04355 769 Pfam Armadillo/beta-catenin-like repeat 299 337 IPR000225 GO:0005515
Tsu07g04355 769 Pfam Armadillo/beta-catenin-like repeat 133 173 IPR000225 GO:0005515
Tsu07g04355 769 Pfam Armadillo/beta-catenin-like repeat 187 213 IPR000225 GO:0005515
Tsu07g04355 769 Pfam Armadillo/beta-catenin-like repeat 90 130 IPR000225 GO:0005515
Tsu07g04355 769 Pfam Armadillo/beta-catenin-like repeat 50 88 IPR000225 GO:0005515
Tsu07g04355 769 SUPERFAMILY Cysteine proteinases 456 749 IPR038765 -
Tsu07g04355 769 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 694 704 IPR025660 -
Tsu07g04355 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 342 IPR000225 GO:0005515
Tsu07g04355 769 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 535 546 IPR000169 -
Tsu07g04355 769 Gene3D - 15 435 IPR011989 -
Tsu07g04355 769 CDD Peptidase_C1A_CathepsinB 512 747 - -
Tsu07g04355 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 58 101 IPR000225 GO:0005515
Tsu07g04355 769 PANTHER IMPORTIN SUBUNIT ALPHA 7 428 - -
Tsu07g04355 769 PRINTS Papain cysteine protease (C1) family signature 712 718 IPR000668 GO:0006508|GO:0008234
Tsu07g04355 769 PRINTS Papain cysteine protease (C1) family signature 535 550 IPR000668 GO:0006508|GO:0008234
Tsu07g04355 769 PRINTS Papain cysteine protease (C1) family signature 696 706 IPR000668 GO:0006508|GO:0008234
Tsu07g04355 769 SMART pept_c1 511 748 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04355 Tsu-Chr7 48803723 48812853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04355 73 352 U-box Gene Family AT3G46510 24.483 5.84e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04355 K15042 - gmx:100798125 597.816