Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04346 ATGGGAAGACACTCTTGTTGTTACAAACAAAAGCTTAGGAAAGGTCTATGGTCacctgaagaagatgaaaaactatTGAATCATATTACTAAATATGGTCATGGATGTTGGAGTTCAGTTCCTAAACAAGCAGGTCTTCAAAGATGTGGTAAGAGTTGTAGGCTAAGGTGGATTAATTATTTAAGACCTGATTTAAAAAGAGGTACATTttcacaagaagaagaaaatattatcattGAACTTCATTCAGTGTTAGGAAATAGATGGTCTCAAATTGCAGCACAATTACCTGGAAGGACTGATAATGAAATTAAGAATCTATGGAATTCTTGTTTAAAGAAGAAACTGAGGCAAAAGGGTATAGATCCTGTGACTCATAAACCACTTTCTGAGGTTGAAAATgttgaacaagaagaagaaaaaaccaaaaGTCAAGAAAAAGTAACAGATATATCAGAATCAGATGAATTGAATCTTCTAAGATCAGAAAGTACTTCTAAGTCAGATGCATGTTCCTATGAACAAAAACAATCTTCAATTGTTCTAAAAGCCTATGGAACTGAAATGGAAGTGGAAGGTTCTTGTTCTAACTATTTGATGGGAAATTACCCTATTCATCCAATGAGTTATTCATCCAATGATAATCTTCCAAATTCAAATTCTTCTCATTGGTTCAACCAAACAGGCTCAAAAACTTTTGACATGAACTCTGAATTTAGTTCTAACATCATGTCTAATAGTACTTTTTGTTACAAACCATCTTttgatgttccttcagaagatgtttctatttcttcagCTTCTTTCCCTATGAAGAATAGTATCTTATCTTCTTGGGGATTGACAGATTGTGACAGTTCTACTAAAGAGAATCAAAGTCATATTCATATGATGGAGAATCagacagaagaagaagaagaagctaaGTGGAATGAGTATCTTCAAAATCCAATGCTAATGCTACAAAATCAAGTACCTGAGTCTTTATGCAATGAGATAAAGCCTGCCACAAATTTGTCTCCTGATGCTTTAGGTGACATGTTGCCACATTCAAAGCAGCAAGAATCTTCTCAATCTTATAATATAGCAACTTTTGGACATGTATAG 1107 0.299 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENIIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENVEQEEEKTKSQEKVTDISESDELNLLRSESTSKSDACSYEQKQSSIVLKAYGTEMEVEGSCSNYLMGNYPIHPMSYSSNDNLPNSNSSHWFNQTGSKTFDMNSEFSSNIMSNSTFCYKPSFDVPSEDVSISSASFPMKNSILSSWGLTDCDSSTKENQSHIHMMENQTEEEEEAKWNEYLQNPMLMLQNQVPESLCNEIKPATNLSPDALGDMLPHSKQQESSQSYNIATFGHV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04346 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu07g04346 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g04346 368 PANTHER HOMEODOMAIN-RELATED 1 257 - -
Tsu07g04346 368 PANTHER MYB DOMAIN PROTEIN 55 1 257 - -
Tsu07g04346 368 MobiDBLite consensus disorder prediction 132 163 - -
Tsu07g04346 368 PANTHER MYB DOMAIN PROTEIN 55 262 358 - -
Tsu07g04346 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g04346 368 Gene3D - 11 67 - -
Tsu07g04346 368 CDD SANT 17 61 IPR001005 -
Tsu07g04346 368 SMART sant 66 114 IPR001005 -
Tsu07g04346 368 SMART sant 13 63 IPR001005 -
Tsu07g04346 368 Gene3D - 69 150 - -
Tsu07g04346 368 MobiDBLite consensus disorder prediction 347 368 - -
Tsu07g04346 368 MobiDBLite consensus disorder prediction 350 368 - -
Tsu07g04346 368 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu07g04346 368 MobiDBLite consensus disorder prediction 132 162 - -
Tsu07g04346 368 CDD SANT 69 109 IPR001005 -
Tsu07g04346 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g04346 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu07g04346 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g04346 368 PANTHER HOMEODOMAIN-RELATED 262 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04346 Tsu-Chr7 48728483 48730359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04346 1 155 MYB Transcription Factor Family AT4G01680 81.290 2.24e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g04346 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04346 K09422 - gmx:100782199 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04346 07 48728483 48730359 Tsu01g03654 01 44305074 44306650 PCT