Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04344 ATGTTTGATTCTAGTTCCTCTCATATTGATTTTCAATCTTCCCAAAGTAAGAATAGTACTCACATGTTCACATATTTAACACCATTAAAGAAACCAAGAATGGAAATTTCAAGccaaaaagaaacaacaaagtCACAAGAACAATACTTGGTGGGGTGTGAATATCAAAAAACAGGAAAAGTGAATTTCTCAAACTTTTCTATACCTGATGTGCTTCTCAAATCAACTCATCATCAACAAAATAGTTCAAGAAATGTTGCTTCAACAAAATTTCAAGAACAAAAGCCTTTAAATTTCACTGCTGCTAACAAATCAAGTATGGAATTACTACCAACAGTTGATGAACATTCTGAAGCTGCTAGCCATAACAGTGCTATTGATATTAGACAAAAGAGAAAAGCTAGTGCTATTGATCTATGTAATGAAAGAGAATCTTCTTCTGTATGCTCACTTGAAGCCTCAAATGATCCAAACTATGGTCTCAGAAAATTGCATGAGGAAACTGATGACTCGCCTTATTTCAGTGATaatgaagaagaaaatcaagaaaatatgataaaaggAAAGCTATCTCGTGAAGGAAACAGAGCCAAGAGAAGCTGCAGGAATGCCAAAGTTCATAATTTATCAGAAAGGAAGAGAAGAGataaaatcaatgaaaaaataCGTATTTTGAGAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCCATTGATTATCTTAAGAACCTCAAACTTCAGTTACAGATTATGTCAATGAGTAGAGGCCTTTGTATGCCATTTAATCATCTTATGATGTCACatcatatgaatatgaatgcaCAACATTTAATGGGTTTGAGGCCACCACAATTACAGTTTCCTATTCCACAACTGAGTAATGGTGGTGTCAcagaaaacaacaacaacagagtTCAGATGTTTGGTTTCTCCAATCAATTTCCAGTAGCACCACACATGTCAATTCCTAATGCACCTTTCATGCCTCCTATTATTGGTAACTCTTCCATTACACCATCACCAACCTGTTATGGTGACATGCAGAATCAACCTGGCAGGTCATGTGGTTAA 1092 0.3278 MFDSSSSHIDFQSSQSKNSTHMFTYLTPLKKPRMEISSQKETTKSQEQYLVGCEYQKTGKVNFSNFSIPDVLLKSTHHQQNSSRNVASTKFQEQKPLNFTAANKSSMELLPTVDEHSEAASHNSAIDIRQKRKASAIDLCNERESSSVCSLEASNDPNYGLRKLHEETDDSPYFSDNEEENQENMIKGKLSREGNRAKRSCRNAKVHNLSERKRRDKINEKIRILRELIPNCNKMDKASMLDDAIDYLKNLKLQLQIMSMSRGLCMPFNHLMMSHHMNMNAQHLMGLRPPQLQFPIPQLSNGGVTENNNNRVQMFGFSNQFPVAPHMSIPNAPFMPPIIGNSSITPSPTCYGDMQNQPGRSCG 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04344 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 279 IPR036638 GO:0046983
Tsu07g04344 363 Pfam Helix-loop-helix DNA-binding domain 206 251 IPR011598 GO:0046983
Tsu07g04344 363 PANTHER TRANSCRIPTION FACTOR PIF3 2 349 IPR044273 GO:0003700|GO:0006355
Tsu07g04344 363 SMART finulus 208 257 IPR011598 GO:0046983
Tsu07g04344 363 CDD bHLH_AtPIF_like 202 264 - -
Tsu07g04344 363 Gene3D - 197 260 IPR036638 GO:0046983
Tsu07g04344 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Tsu07g04344 363 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04344 Tsu-Chr7 48718958 48721170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04344 43 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.190 4.68e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g04344 HLH 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04344 K12126 - gmx:100804665 232.261