Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04343 ATGAGAAAAACTAAAAGTtcaaattcttcttcatctattAGCAGCAACACCAACcataatctttttatttctaCTGCATCCTCTCTCAACACACAACTTCCTACAGATCTTAGTCTTGGACTCACCATTTCCTCCAATCTTGGCTCCTCTGTTTCAAGgaGGCAATGGCAACAAAACTTTGATTATAGTGATCATAGTAGCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTAAAAACTCTTGAACACATGTTTGACACTACCATTCTATGGGGAAATGAAATGGATGAAGTGCAACCAGAGAGATGTCATGTGTTAActtatgaagatgaagaaggagatTTGGTTATGGTTGGTGATGTTCCTTGGGAGATGTTTTTATCTACTGTTAAGAGGTTGAAGATCACAAGGGTAGACACATTTGGATGTTAG 483 0.3354 MRKTKSSNSSSSISSNTNHNLFISTASSLNTQLPTDLSLGLTISSNLGSSVSRRQWQQNFDYSDHSSFFVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDEVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04343 160 ProSiteProfiles PB1 domain profile. 67 157 IPR000270 GO:0005515
Tsu07g04343 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 159 IPR003311 GO:0005634|GO:0006355
Tsu07g04343 160 Pfam AUX/IAA family 63 154 IPR033389 -
Tsu07g04343 160 SUPERFAMILY CAD & PB1 domains 59 152 - -
Tsu07g04343 160 Gene3D - 61 159 - -
Tsu07g04343 160 PANTHER AUXIN-INDUCED PROTEIN 7 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04343 Tsu-Chr7 48703820 48704790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04343 9 152 B3 DNA Binding Superfamily AT4G23980 28.472 1.24e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu07g04343 AUX_IAA 1.6e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04343 K14484 - gmx:100818376 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04343 07 48703820 48704790 Tsu01g03667 01 44447840 44448895 PCT