Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04336 ATGGAAAACCAATCCTTTCTTCTAACCAACCGTCAAAATTTACCCATCACTTCTTCAAAATCCTTCAACGATTTCACCACCTTACAACaaccacaaccaccaccaccatcatcctcatcatcatcagaaaTTCAATCCTGTAACAACATCActccacaacaacaacaacaaccatttTCACCtcccaaacaaaaaaaactcagcCGCTGCAAAACAGCACCAGCCATGTTCATCCTTTCAAATCTTAAACCACAAAACAACCATCCTCAACTTCCTAAACCACAAACAAATTCCATTATCCGACAAGGCATTTGGCTTCTCTTAATCTATCTTTCTGTCGGTGTCACTATTTACTCTTTCAACACAAAAAAATTCTCTGGCATAGAAACTCACCCTGTTGTTGATGCACTTTATTTTTGCATAGTTACCATGTGTACAATTGGTTATGGAGACATAGCTCCATTAACCccttttactaaactttttgcttgtgtttttgttttggttggtTTTGGATTTGTAGATATACTTTTAAGTGGacttgttaattttgttttggatttacaAGAAAATACGATTTTAACCGGTCTTCAAATGGGTGCTAGGGAAGGTTTTTCTGCTAGGGATTATATTGTTGATGTTGCAAAAGGTAGAATGAGGATTAGATTGAAGGTTGGTTTAGCACttggtgttgttgttttgtGTATTGGTGTTGGGAGTTTGGTTCTGTGTTTTGTTGAGGATTTGAATTGGGTTGATTCGATTTATTTGGCGGTTATGTCTGTTACAACGGTTGGTTATGGAGATCGAGCATTTAAGACGCTTCCGGGGAGATTGTTTGCTGCAATTTGGTTGTTGTTTTCTACTTTGATGGTTGCTAGAGCTTTTCTTTATTTGGCTGAGGCTAGAATTGATAGAAGACATAGGAGATTGGCTAAGAAGGTTTTGCATAGAGAAATTACTATCGAAGATTGGCTTGCTGCTGATATCAACAATACCGGTTTTATTAGTAAATCAGAATATGTGATCTTCAAGCTGAAAGAGATGGGAAAAATACAAGATAAAGATATAATGGAAATTTGTAATCAATTTAGAAAGCTTGATCCTTCTAACTGTGGGAAGATAACATTACCTCATCTCTTGGAGGGTAGGtcatga 1158 0.3143 MENQSFLLTNRQNLPITSSKSFNDFTTLQQPQPPPPSSSSSSEIQSCNNITPQQQQQPFSPPKQKKLSRCKTAPAMFILSNLKPQNNHPQLPKPQTNSIIRQGIWLLLIYLSVGVTIYSFNTKKFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKLFACVFVLVGFGFVDILLSGLVNFVLDLQENTILTGLQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEDLNWVDSIYLAVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKKVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDIMEICNQFRKLDPSNCGKITLPHLLEGRS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04336 385 Pfam Ion channel 106 185 IPR013099 -
Tsu07g04336 385 Pfam Ion channel 232 301 IPR013099 -
Tsu07g04336 385 ProSitePatterns EF-hand calcium-binding domain. 329 341 IPR018247 -
Tsu07g04336 385 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 54 380 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu07g04336 385 MobiDBLite consensus disorder prediction 39 63 - -
Tsu07g04336 385 Gene3D - 209 328 - -
Tsu07g04336 385 Gene3D - 85 196 - -
Tsu07g04336 385 PRINTS Two pore domain K+ channel signature 142 170 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu07g04336 385 PRINTS Two pore domain K+ channel signature 263 272 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu07g04336 385 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 54 380 - -
Tsu07g04336 385 SUPERFAMILY Voltage-gated potassium channels 215 323 - -
Tsu07g04336 385 SUPERFAMILY EF-hand 325 380 IPR011992 -
Tsu07g04336 385 MobiDBLite consensus disorder prediction 1 28 - -
Tsu07g04336 385 MobiDBLite consensus disorder prediction 1 66 - -
Tsu07g04336 385 SUPERFAMILY Voltage-gated potassium channels 99 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04336 Tsu-Chr7 48651557 48654706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04336 63 381 Ion Channels AT4G01840 68.000 1.59e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04336 K05389 - gmx:100801488 567