Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04333 ATGTCAGGAAAGATACTTATATCTGTTGTTTCTCTTATCCTTGTTGTAGGTGTTGCCATCGGTGTTGTTGTCGCTGTTCACAAAAACGGTGAAGATCCTGAGGTTCAAACTCAACAAAAATCTCTTAGAGTTATTTGCCAAAATGCAGAAGACCAAAAACTCTGCCATGAAACTCTTAGCTCTGTCGGTGGCGTCAACACTTCAGATCCTAAGGCATACGTAGCGGCTGCTGTGAAAGCAGCCACTGACAATGTCATTAAGGCATTTAACATGAGTGATAGACTCACTGTTGAGTACGGAGACAAGGATAGCGGCATCAAGATGGCCCTTGATGACTGCAAAGACTTGATGCAGTCTGCTTTAGACAGTCTTGATCTCTCCAACACATTGGTTCGTGACAACGACATTCAATCTGTTCATGCCCAAAATCCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGATGATGAAAAAGAGGCTGAGAAGAAGATTAAGGATCAATTTCAAACTCAGGTTATAGACCGCGCGACAAAGGTCACCGCTGTTGCTCTTGATGTTGTGACTGGTTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTGAGGAAATTGATAATGACGTAGGATTCCCTGCTTGGGTCTCTGCTACTGATCGCAAGCTTTTGGCTCAAATGCAAAAAAAAGGATGGAGATCAAATGTTAAGCCTAATGTTGTTGTTGCCAAGGATGGTAGTGGtcaatttaaaacaattatGGAAGCTATTAATTCTTACCCTAAGGGAAACAAAGGAAGATACATTATCTACGTTAAGGCTGGTGTCTATGATGAGTACATCACTGTCCCCAAACAGTGCGTTAATTTGCTTATGTACGGTGATGGCCCTCAAAGGACTATTATCACCGGTAAAAAGAACTATGGCAAAGATGGTATCAAGACCATGCAAACCGCCACCTTTGCCAACACCGCAATTGGGTTCATTGCAAAGGCAATGACATTTGAGAACACAGCCGGTCCTGATGGTCATCAAGCTGTTGCTTTGAGAAACCAAGGAGATATGGCTGCTTTCGTTGGTTGCCATATCTTGGGTTACCAAGACACCTTGTACACTCAATCCAACAGGCAATTCTACCGTAACTGTGTTATCTCTGGTACCATTGATTTCATCTTTGGAACATCTCCTACTTTGATCCAACACTCTATGATCATCGTAAGAAAGCCCAACAACAACCAATTCAACACAATTACCGCAGACGGATCAGCGGATTCTAAGAACATCAACACTGGTATTGTGATCCAGGACTGCCAGATTGTCCCAGAGGCAGCATTGTTCCCTGTAAGGTTCCAAATCAAATCATACTTGGGCAGACCATGGAAGGCATATGCAAGGACAGTGTTCATGGAATCCACCATGGGTGACTTTATTCATCCAGATGGTTGGTTCCCTTGGGCAGGTGATCAATTTTTGGACACACTTTACTATGCTGAGTATGCCAACACTGGACCTGGTGCCAATCTTGCCAGAAGGATCAAGTGGAAGGGTTATCACGGTGCCATTAGCCGGGCCGAGGCTACAAGATTCACCGCTGCTGAATGGCTCCAGGCTGGACCCACGTCCAAGGCCGACTGGTTGAGGCCTCTTCATGTTCCTCATTACCTTGGCTTCTTCTCCAAttcaaaaaaaactttggaacttgaaaattaa 1767 0.4341 MSGKILISVVSLILVVGVAIGVVVAVHKNGEDPEVQTQQKSLRVICQNAEDQKLCHETLSSVGGVNTSDPKAYVAAAVKAATDNVIKAFNMSDRLTVEYGDKDSGIKMALDDCKDLMQSALDSLDLSNTLVRDNDIQSVHAQNPDLRNWLSAVISYKQACMEGFDDEKEAEKKIKDQFQTQVIDRATKVTAVALDVVTGLSNILQEFGLKLDLKPASRRLLSEEIDNDVGFPAWVSATDRKLLAQMQKKGWRSNVKPNVVVAKDGSGQFKTIMEAINSYPKGNKGRYIIYVKAGVYDEYITVPKQCVNLLMYGDGPQRTIITGKKNYGKDGIKTMQTATFANTAIGFIAKAMTFENTAGPDGHQAVALRNQGDMAAFVGCHILGYQDTLYTQSNRQFYRNCVISGTIDFIFGTSPTLIQHSMIIVRKPNNNQFNTITADGSADSKNINTGIVIQDCQIVPEAALFPVRFQIKSYLGRPWKAYARTVFMESTMGDFIHPDGWFPWAGDQFLDTLYYAEYANTGPGANLARRIKWKGYHGAISRAEATRFTAAEWLQAGPTSKADWLRPLHVPHYLGFFSNSKKTLELEN 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04333 588 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Tsu07g04333 588 PANTHER PECTINESTERASE 3 576 - -
Tsu07g04333 588 Pfam Plant invertase/pectin methylesterase inhibitor 42 195 IPR006501 GO:0004857
Tsu07g04333 588 SUPERFAMILY Pectin lyase-like 255 557 IPR011050 -
Tsu07g04333 588 CDD PMEI-like_3 45 202 - -
Tsu07g04333 588 Pfam Pectinesterase 258 555 IPR000070 GO:0030599|GO:0042545
Tsu07g04333 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Tsu07g04333 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 196 IPR035513 -
Tsu07g04333 588 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Tsu07g04333 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 180 IPR006501 GO:0004857
Tsu07g04333 588 Gene3D - 252 576 IPR012334 -
Tsu07g04333 588 PANTHER PECTINESTERASE 3 576 - -
Tsu07g04333 588 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04333 Tsu-Chr7 48633628 48641242 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04333 1 576 Carbohydrate Esterase AT2G47030 39.934 1.72e-139 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04333 K01051 - gmx:100781507 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04333 07 48633628 48641242 Tsu01g03677 01 44519814 44522002 PCT