Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04331 ATGTCAGGAAAGATAATTATATCTATTGTTTCTCTTATTCTAGTTGTAGGTGTTGCCATCggtgttgttgttgctgttcaCAAGAAAGGTCAAGATCCTGAGATTCAAACTCAACAAAAATATCTTACAGTTATTTGCCAACCTGCAGAAGACAAAAAACTCTGTTATGAAACTCTTAGCTCTGTCCGTGGTGCCGATGCTGCAGATCCTAAGGCATACGTAGCGGCTGCTTTGAAAGCAGCCACTGACAATGTCATTAAGGCATATAACATGAGTGATAGACTCATTGTTGAGCACGGTGACAAGGATAGGGGCATCAAGATGGCTCTTGATGGCTGCAAAGAAATGATGGAGTTTGCTTTGGACAGTCTTGATCTCTCCACCATTGTGGTTCGTGACAACAACATTCAATCTGTTCATGATCAAGATGTTGATCTCCGGAATTGGTTGAGTGCAGTTATCTCTTACAAACAAGCTTGCATGGAAGGATTTGACGATAAAATAGAGGGTGAGAAGAAGATTAAGGATCAATTGCATGCTGAGACTATAGACAGCGCGACAAATGTCACCGTTGTTGCTCTTAACATTGTGAGTCATTTGTCCGATATACTCCAAGAATTTGGTTTGAAATTAGATCTCAAACCTGCCTCTCGTCGTCTTCTATCTAAGGAAGGATTCCCTACATGGGTACCTACTACTGATCGCAAGCTTTTGGTTCAAATGCAAGGAAAAAATTGGAGATCAAATATTGTGCCTAATGCCGTAGTTGCCAAGGATGGTACTGGCCAATTTAAAAGTATTACGGATGCTATTAAGGCTTTCCCTACAGGACACAAAGGAAGATATTATATCCATGTTAAAGCTGGTGTCTATGAGGAGTCCATCAATGTCACCAAAAATTGCAAGGACTTGACTATGTTTGGTGATGGCCCTAAATTGACCATTATCACGGCTAAAATCAAGACCATGTTTACCGCACCCTTTACCAACCAAGCAATGGGGTTCATTGCAAAGGACATGACATTTCAGAACACAGCCGGTCCTATTGGTGAACAAGCTGTTGCTTTCCATAACCAAGGAGATATGTCTGCTCTCGTTAATTGCCATTTCGAGGGTTACCAAGACACCTTGTACGTTCACGCCAACAGACAATTCTACCGCAACTGTGTTATCTCTGGTACCATCGATTTCATCTTCGGAACATCTACCACCTTGATCCAAAACTCTGAGATCATCCTAAGGAAGCCCGGCGTAAATCAAACCGTCAACACAATTACCGCAGACGGAACAGAACATAAAGATATGGTCACTGGTATTGTGATCCAGAACTGCACGATCATTCCAGAGAAAGAATTGATCCCTGTAATGAAGCAAATTCCAGACAAAGAATTGATCCCTGTAATTAAGCAAGTCAAATCTTACTTGGGCAGGCCATGGAAGGAAAGGTCAAGGACAGTCTTCATGGAATCCGACATGGGTGACGTAATTGATCCAGCTGGATGGACCCCTTGGCAAGAGTTGAACGGGACGCTCAAAGTTGATCTATATATGGACAATTGTTACTATGCAGAGTATAAAAACACCGGACTTGGTGCCAATCTTACCAACAGGATCAAGTGGAAGGGTTATCAGGGTGAAATTAGCACGCAGAATGCTACAAATTTCATCGGTAAAGAATGGCTCAAGGCTACTGGCAATTTTACCACCAAGCGTGCTCAAAACAAGACTGCATACGAATGGTTGAAGGATGTCGATGTTCCTCACTACCTTGAATTTGCAAGgcaatga 1788 0.4161 MSGKIIISIVSLILVVGVAIGVVVAVHKKGQDPEIQTQQKYLTVICQPAEDKKLCYETLSSVRGADAADPKAYVAAALKAATDNVIKAYNMSDRLIVEHGDKDRGIKMALDGCKEMMEFALDSLDLSTIVVRDNNIQSVHDQDVDLRNWLSAVISYKQACMEGFDDKIEGEKKIKDQLHAETIDSATNVTVVALNIVSHLSDILQEFGLKLDLKPASRRLLSKEGFPTWVPTTDRKLLVQMQGKNWRSNIVPNAVVAKDGTGQFKSITDAIKAFPTGHKGRYYIHVKAGVYEESINVTKNCKDLTMFGDGPKLTIITAKIKTMFTAPFTNQAMGFIAKDMTFQNTAGPIGEQAVAFHNQGDMSALVNCHFEGYQDTLYVHANRQFYRNCVISGTIDFIFGTSTTLIQNSEIILRKPGVNQTVNTITADGTEHKDMVTGIVIQNCTIIPEKELIPVMKQIPDKELIPVIKQVKSYLGRPWKERSRTVFMESDMGDVIDPAGWTPWQELNGTLKVDLYMDNCYYAEYKNTGLGANLTNRIKWKGYQGEISTQNATNFIGKEWLKATGNFTTKRAQNKTAYEWLKDVDVPHYLEFARQ 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04331 595 SMART PMEI_2 37 196 IPR006501 GO:0004857
Tsu07g04331 595 PANTHER PECTINESTERASE 3 588 - -
Tsu07g04331 595 PANTHER PECTINESTERASE 3 588 - -
Tsu07g04331 595 SUPERFAMILY Pectin lyase-like 253 565 IPR011050 -
Tsu07g04331 595 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Tsu07g04331 595 CDD PMEI-like_3 45 201 - -
Tsu07g04331 595 Pfam Pectinesterase 253 562 IPR000070 GO:0030599|GO:0042545
Tsu07g04331 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 202 IPR035513 -
Tsu07g04331 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Tsu07g04331 595 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 176 IPR006501 GO:0004857
Tsu07g04331 595 Pfam Plant invertase/pectin methylesterase inhibitor 45 195 IPR006501 GO:0004857
Tsu07g04331 595 Gene3D - 247 576 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04331 Tsu-Chr7 48625756 48627756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04331 40 566 Carbohydrate Esterase AT2G26450 37.222 6.47e-112 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04331 K01051 - gmx:100781507 655.21