Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04329 ATGGAAGAAGATGCATTTTCTTCAGCAAAAATTTCAGTCTGGTGGGACATTGAAAATTGTCAAGTTCCTAGAAACTTCAACGCCAACACCATTGCTCAAAACATCACCTCCGCCCTCTTCAATTCCAACTTCCACGGCCCCCTCTCCATCTCCGCTTACGGTGACACCACTCGTCTCCCTTTTCACGTTCAACACGCTCTCTCTTCCACCGGCGTCTCCCTCCACCATGTCCCTGCCGGTGTTAAAGATGCTAGTGATAAGAAAATACTTGTTGATATGTTACTATGGGCGGTTGATAATCCTGCACCTGCTAATTACTTGTTGATTTCTGGTGATAGAGATTTTTCAAATGCACTTCATCAACTTCGTATGAGAAGGTATAATGTTCTTCTTGCTCAACCTTTTTCTGCTTCTGCACCTCTTGCCGCCGCCGCTAAATTTGTTTGGTATTGGCCTACTCTCATTTCCGGTGGTCCCCCTCGCAACAATGCTacaaatcaaaaccctaatttctctAACAAATTCCCAAATTCAATAGAATCAGCGagtcataataataataataataataataataacaataacgacaacaacaaaaacaataacaacgATAGCTCTGTTATTAATGCTGAACAATCGAAATCGGTGAAATTGTTTCGATTAACACCACACCAATTCTTTAAAAGTAATGACCCTACAATAATCCCAATGAGTACTAATCTCAAAAGCAATGCTAGTTCTGATTTTGGTGATAGTGATGATTTGCATCATAATAAGCAATTAATGCTTCCAATTTCTTCTAGTGGTTATGATGAATCACCTATTTTGTCTGCAAGTGCTCCAATTGTAGCTAAGCCTATAAGTAGTAGCTTAACTACATCGCTAAAAGTAGATAACAACCCTAATTGTGGTGTTGGTGGTGGTTCTGAACAATTGTTGGTTTCTAATGTAAGGAGAGTGAAGAGTTTGCCGACAGTATCGACTTATGAGAACTCACAAGGACTTGTTGATGTTATTCTAGTAACATTGGAGACACTCAAGAATGAAATGATTTTACCAACTgaagaaaatataattgattGTATTCGTTACGGTGATCTCAAGTATCAAACAATTGATGTTAAAAAGGCTTTGGATTTTGCAATTGAGCAACAAAGGGTGGTTAAAAAATGCTATGCTAAATTACAGCTGTATCTTGTTGCGAATGAGAATCTATGGAAGTGTGTCAATCCTTTAGGTGGATTGCAGAGTCATTTCCCAGACGCAATTTGGATTAGAATAGAGAAATTCCTTGCTTCATCTTCAGGAAGATTGATGATTTTGGCATCGCGTAGCAGATATGAAGCATCTTTAATTCTAAAGAGATTGTGCCTTGAAGAGCTTGTTTTGGGTGATGTACTTAAAATTTTGGAGATTATAATCACAAACAAGAAATGGATTATACCTTATCATTCTAGATGGCAGCCAATTAGCATTTCACTTCCAGAGACTAAAGATGATAATTGA 1506 0.3625 MEEDAFSSAKISVWWDIENCQVPRNFNANTIAQNITSALFNSNFHGPLSISAYGDTTRLPFHVQHALSSTGVSLHHVPAGVKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNVLLAQPFSASAPLAAAAKFVWYWPTLISGGPPRNNATNQNPNFSNKFPNSIESASHNNNNNNNNNNNDNNKNNNNDSSVINAEQSKSVKLFRLTPHQFFKSNDPTIIPMSTNLKSNASSDFGDSDDLHHNKQLMLPISSSGYDESPILSASAPIVAKPISSSLTTSLKVDNNPNCGVGGGSEQLLVSNVRRVKSLPTVSTYENSQGLVDVILVTLETLKNEMILPTEENIIDCIRYGDLKYQTIDVKKALDFAIEQQRVVKKCYAKLQLYLVANENLWKCVNPLGGLQSHFPDAIWIRIEKFLASSSGRLMILASRSRYEASLILKRLCLEELVLGDVLKILEIIITNKKWIIPYHSRWQPISISLPETKDDN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04329 501 CDD PIN_limkain_b1_N_like 10 134 - -
Tsu07g04329 501 Pfam NYN domain 10 149 IPR021139 GO:0004540
Tsu07g04329 501 MobiDBLite consensus disorder prediction 160 206 - -
Tsu07g04329 501 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 4 485 - -
Tsu07g04329 501 Gene3D - 6 153 - -
Tsu07g04329 501 PANTHER LIMKAIN B LKAP 4 485 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04329 Tsu-Chr7 48617998 48619798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04329 3 160 C2H2 Transcription Factor Family AT5G61190 72.152 3.17e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04329 - K17573 mtr:MTR_7g110390 627.091