Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04327 atgtctGGGCGAATTTCTATCGAAAATGTTGAGAACGGAAAGCTCAAGCGTAGAATGGAGGAGCACTCAGAGCCGAGACCTGAGAAGGAACCGAAGGTCATGTCATCAACTTCTGAATCCAATGCTGAAGATTTACTTAATCTAAGACTTGGCATTCACACCGAGTCCTCTGTCAAATCATTGGAGTTTGGTGAACATTCAAGTTCGTCTCAAAGTGTTGTTGTTGAACCTTTATCCCATAATGTTGATGGTGAGCCTTCACATGATCGGGAAGTGGCGAAATTTCCTTGTCCTTATTGTGACAAGAAATATTCCACTCGTCAAGCACTTGGAGGACACCAAAACGCTCATAAGCGTGAGCGTGCCTtcataaaaatggaaaaacaaaGGAGAGAAGAGGATCTGATTTCAACCTTTAGATTTAGATCTATTCATCAGCCATACCTTGATCCAACTTCAAGCCCTAATCACTACCAAGGATATTCTTATTTAGGTAGTGCTAACTTGCACCACCCAATTAGTCACTATATGAACAATACCATGCCTTCTTGGGCTAGTGGTTCTTCTTATGGTGGCTATGGAGGGTTGTATATGCCAAATATACCCCCCACAACACCCCAACTTGTGATGCAAATGCCAAACTCATCCCTCACATCAACACTATGTGGGTCGACTAATTTTTTGGGTGAATGTCAAAATGCTGCTAATCAAACCCCTTTAATTGCTGAGGCTTGTACTGGTCCTATTGAAGAATGCCTAATTCAAACAAATCCCAACGTGTCTTCCTCATCAACTCAATCAACTTTGGAGGAGTTGAACTTGGATTTCACACTTTAA 837 0.4098 MSGRISIENVENGKLKRRMEEHSEPRPEKEPKVMSSTSESNAEDLLNLRLGIHTESSVKSLEFGEHSSSSQSVVVEPLSHNVDGEPSHDREVAKFPCPYCDKKYSTRQALGGHQNAHKRERAFIKMEKQRREEDLISTFRFRSIHQPYLDPTSSPNHYQGYSYLGSANLHHPISHYMNNTMPSWASGSSYGGYGGLYMPNIPPTTPQLVMQMPNSSLTSTLCGSTNFLGECQNAANQTPLIAEACTGPIEECLIQTNPNVSSSSTQSTLEELNLDFTL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04327 278 MobiDBLite consensus disorder prediction 1 41 - -
Tsu07g04327 278 Pfam C2H2-type zinc finger 95 119 - -
Tsu07g04327 278 Gene3D Classic Zinc Finger 66 146 - -
Tsu07g04327 278 SUPERFAMILY beta-beta-alpha zinc fingers 94 123 IPR036236 -
Tsu07g04327 278 MobiDBLite consensus disorder prediction 10 33 - -
Tsu07g04327 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Tsu07g04327 278 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Tsu07g04327 278 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 163 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04327 Tsu-Chr7 48608748 48609584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04327 30 197 C2H2 Transcription Factor Family AT5G25160 29.825 2.54e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g04327 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04327 - - cam:101490368 185.267