Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04326 ATGGAAGCTTTTCAATTGTACGGTAATGGTACTGCTGGTTCCTCTGATTTAAGAGCTATGGAGAAAAGATCAGACTGGGATTTGAATAATTGGAATTGGGATGGTCATCTTTTTCTAGCTACTAGTAAATTGAATCCTGTTCCAGAACATACACAATTTTTGCCTCTTGCTGTTGGTGGTAGTGGTAGTGGTGCTGGTGGTGGTTCGTCGAACTCGAATAGTTCATCTTCTTGTTCTGAACAGTTAGATCTTGGGATTTGTCAAGGGAATAAAGAAGGTGAGAGGAAGAGGAGGGTTATTGTTGTGGAGGATGATGAACTAGGTTTGAATAAGGAAGGTGCTAGTTTAAGTTTGAATCTTGGTGGTGGTAGTGGTGGTGGTGTTCAGGTGGCCGCTACATGGGAAGGAAATGTTGGGAAGAAAAGTAGAGTAGCTGCTGGAGGTAGTAGTTCTAGTAGAGCATTTTGTCAGGTGGAGGATTGTCGCGCAGATCTAAATAATGCGAAAGATTATCATAGACGTCATAAAGTTTGTGAGATACACTCTAAGGCTAGTAAGGCGCTTGTTGGAAATGCGATGCAGAGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAATTTGATGAAGGAAAGAGAAGCTGTCGGAGACGTTTGGCTGGCCATAATAAAAGGAGGAGAAAAACAAATCAAGATGCTGTTCCTAATGGAAGTTCACCGAACGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCCTGGCAGGTCAAATCAGACCGCAGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCCAATCAGAATGGTGGACAAGGGGGAAGGAACTTGTCTAACCTTTTACGGGAACCTGAGAATCTGTTGAAAGAAGGGTCTTCGTCTGGGAAGTCTGAGATGGTTTCTACTTTAATCACGAATGGTTCTCAAGGTTCTCCAACTGTTACAGTACAGAATCAAGCAGTTTCTATTAGTGAAATTCAGCATCAAGTGGTGCATACACATGATGCTAGGGTTGCTGATCAACAAACCACATCCTCTGCAAAGCCCGGTGTTTCAAACAGCCCTCCGACTTACTCAGAAGCAAGAGACAGTACTGCTGGACAGGCCAAGATGAATGATTTTGATCTGAATGACATCTATATTGATTCAGATGATGGAATAGAGGATATAGAAAGGTTGCCTGTCACTGCAAATATTGGTACTAGTTCTCTTGATTACCCATGGATGCAACAGGGTTCACATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAGTCCCCCTCTAGTTCCACTGGCGAAGTTCAGAATCGCACAGATCGGATTGTTTTTAAACTCTTTGGTAAAGAACCAAGTGATTTTCCTCTTGTACTCAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACTGATATTGAAGGCTACATACGGCCTGGTTGTATCGTTTTGACTATTTATCTGCGTCAGGCTGAGGTTGTGTGGGAGGAGCTTTGCTTAGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGATTTTTGGAGAACTGGATGGGTTCACATCCGGGTGCAGCATCAGATGGCCTTCATTTTCAATGGCCAGGTTGTCATCGATACATCCTTACCATTCAGGAGTAACAATTATAGTAAAATTTTAAGTGTTAGCCCAATTGCTGTACCAGCATCAAAGACAGCTCAATTTTCTGTGAAGGGTATCAACTTGGCTCGTTCTGCCACTAGGTTATTGTGTGCTTTAGAAGGGGATTATTTGGTCTGTGAAGATACTCACGAGTCTACGAATCAGTGCTCCAAGGATCTTGATGAGCTTCAGTGCGTCCAATTTTCATGTACTGTACCTGCGATGAATGGACGAGGATTTATTGAGATCGAGGACCAGGGTTTGAGCAGcagtttttttcctttcatagTTGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTATTGGAATCAAGCGATACTTATCCAGATGTGGAAGGGGCTGGAAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAGATAAAATCTAGGACGGTTCCCTTGAAATCTAGCGTGGATCTGTTTCCATTAGATCGATTCAAATGGCTCGTGGAGTTCTCTGTGGACCATGACTGGTGTGCGGTAGTTAGAAAGCTATTGAACCTCATGCTTGATGGAACTGTGAGTACAGGAGACCACACATCCCTCTATCTTGCACTTTCAGAGTTGGGTCTCCTTCACAGAGCTGTGAGGAGAAATAGCAGGCAGTTGGTGGAGCTTCTTTTGAGATTTGTGCCTCAAAATGTTTCAGATAGACTAGGACCTGAAGACAAGGCACTGGTTAACGGAGAGAATAAAAACTTCTTGTTTAGACCTGATGCTGCCGGTCCTGCTGGTCTGACACCACTCCATATTGCAGCCGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAATAGTGTTCGTGACAGCACAGGTTCAACACCTGAGGATTATGCACGTTTACGTGGTCATTACACTTACATTCACTTGGTGCAGAAGAAAATCAACAAGAGACAACAAGGAGGGGCTCATGTGGCGGTTGACATTCCTAGCAATCTGACAATGTTTGATACAAGTCAGAAGAAAGATGAATCATCCACCACCTTTGAAATTGGAAATGCTGATGTTAGAACTCTCCAAAAGAAGAACTGCAAATTTTGTGATCAGAAGTTGTCGTGTAGAACTGCTGTTAGGAAGTCTTTTGCATACAGACCTGCAATGCTGTCAATGGTGGCAATAGCTGCGGTCTGTGTCTGTGTGGCTCTTCTGTTCAAAAGCTCGCCCGAAGTTCTGTATATATTCCGACCTTTCAGGTGGGAATCGTTGGAGTATGGAACAAGCTGA 3048 0.4301 MEAFQLYGNGTAGSSDLRAMEKRSDWDLNNWNWDGHLFLATSKLNPVPEHTQFLPLAVGGSGSGAGGGSSNSNSSSSCSEQLDLGICQGNKEGERKRRVIVVEDDELGLNKEGASLSLNLGGGSGGGVQVAATWEGNVGKKSRVAAGGSSSSRAFCQVEDCRADLNNAKDYHRRHKVCEIHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSPNDDQTSSYLLISLLKILSNMQPGRSNQTADQDLLTHLLRSLANQNGGQGGRNLSNLLREPENLLKEGSSSGKSEMVSTLITNGSQGSPTVTVQNQAVSISEIQHQVVHTHDARVADQQTTSSAKPGVSNSPPTYSEARDSTAGQAKMNDFDLNDIYIDSDDGIEDIERLPVTANIGTSSLDYPWMQQGSHQSSPPQTSGNSDSASAQSPSSSTGEVQNRTDRIVFKLFGKEPSDFPLVLRAQILDWLSHSPTDIEGYIRPGCIVLTIYLRQAEVVWEELCLDLTSSLNRLLDVSDDDFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILSVSPIAVPASKTAQFSVKGINLARSATRLLCALEGDYLVCEDTHESTNQCSKDLDELQCVQFSCTVPAMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESSDTYPDVEGAGKIQAKNQAMDFIHEMGWLLHRSQIKSRTVPLKSSVDLFPLDRFKWLVEFSVDHDWCAVVRKLLNLMLDGTVSTGDHTSLYLALSELGLLHRAVRRNSRQLVELLLRFVPQNVSDRLGPEDKALVNGENKNFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWNSVRDSTGSTPEDYARLRGHYTYIHLVQKKINKRQQGGAHVAVDIPSNLTMFDTSQKKDESSTTFEIGNADVRTLQKKNCKFCDQKLSCRTAVRKSFAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWESLEYGTS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04326 1015 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1014 IPR044817 GO:0003677
Tsu07g04326 1015 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1014 - -
Tsu07g04326 1015 Pfam SBP domain 156 229 IPR004333 GO:0003677
Tsu07g04326 1015 MobiDBLite consensus disorder prediction 220 245 - -
Tsu07g04326 1015 MobiDBLite consensus disorder prediction 353 383 - -
Tsu07g04326 1015 Gene3D - 146 217 IPR036893 GO:0003677|GO:0005634
Tsu07g04326 1015 MobiDBLite consensus disorder prediction 305 330 - -
Tsu07g04326 1015 Gene3D - 746 936 IPR036770 -
Tsu07g04326 1015 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Tsu07g04326 1015 MobiDBLite consensus disorder prediction 421 457 - -
Tsu07g04326 1015 MobiDBLite consensus disorder prediction 348 387 - -
Tsu07g04326 1015 SUPERFAMILY SBT domain 154 234 IPR036893 GO:0003677|GO:0005634
Tsu07g04326 1015 MobiDBLite consensus disorder prediction 307 330 - -
Tsu07g04326 1015 SUPERFAMILY Ankyrin repeat 778 899 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04326 Tsu-Chr7 48595124 48601242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04326 22 1015 SBP-box Gene Family AT3G60030 53.823 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu07g04326 SBP 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04326 - - gmx:100809806 1495.72