Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu07g04302 | ATGCTGGAGATTCAGAATGAGCAACCGGAGCATCAAAGAATCAACAATTTCACCGTAGAACCAACAAACTCTCAATTTCCCatcgacaacaacaacaacaacaatggcaCTACTACTTTCCCCAATCACGCTAACGCATTCGATTCTGGATTTCTCCCTCCTCCTCCCCCTCCCCCTCCTCATCCTAATCATAACTTCTCCAtccctcctcctcctcctcctccacctcCCAATCCTAACTTCTCCATTCATCCTCCTCCTCCACCACGCAAACGACCCTGGGGTGCTTCTTCAGTTCCAGATCAAGTAGATGCTACGGCTCATGTTAAAGTTTACGTTGCACCAGTTCCAAGAACAGCATCCGAGGCTGATATCCGCCTTGTGTTCGAAGGATATGGAACTATCGTTGAGGTTGTTCTTTTAAGAGATAAGAAAACCGGAGCTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTCAATGAAGCTGACATGGCTATTAAGGCCTTAAGCAATCAGTATACTTTTCCTGGAGAATCATCTCCTGTTGTTGTCAGATTTGCTGATCGAGATCGTGAACGTTTTGTGGTGGATAAAGTTTTTGTTGGTAACATCAACAGAGAAACTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATATAGAAGATGTCGTCATCCTGCCGAATCGTGGAtattgttttgtcaaattttctAGTAAAGAGATGGCATTGGCAGCAATCAAAGGGTTGAATAGAACATTCACGATGAGAGGATGTGATCAACCAGTAATTGTTCGTTTTGCAGAACCTAAGAAACCTAAGATGGGAGAATCAAGGGGAAACTACTTACCTGCAAATGCAAATTATGGTCCCGATTCTCAAGAACCagcagcttgGCCACTGCCAAATTTTTGTGGTCCCAATACTGGAGGTAGTATTATGCATAATGGTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACATGcacattcacattcacatttgGCTTCAATGCCTTTGCGGCCAATTCAAGCTCCCACCTTTCCTTCTCAACCATTTAATACTGAGGTGCAAAGACAATTTCATCCAGCAGATTTGCCGGTCCGAAATATAGAGCAGCAGCTAAGTTCTCAGCTGCCTACTCAGACTGAACGTAACAATACAGTTGCTGGAAGTACGACATCTGATCTGTCTACAGATCCCCAAGACGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCTGATGGTAACAAGTACTACTACAATTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTTTATGACAAAGAATCACAGAAGCAACATGAGCAAGATGATCCTAGCTTTCTCCAACCGCAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAGGCAACAGGAAACAAATCATGATCACATGGAGTCAGAAACAAGTCCTGTTGTTGAACAggtgtga | 1557 | 0.404 | MLEIQNEQPEHQRINNFTVEPTNSQFPIDNNNNNNGTTTFPNHANAFDSGFLPPPPPPPPHPNHNFSIPPPPPPPPPNPNFSIHPPPPPRKRPWGASSVPDQVDATAHVKVYVAPVPRTASEADIRLVFEGYGTIVEVVLLRDKKTGARQGSCLVKYSTFNEADMAIKALSNQYTFPGESSPVVVRFADRDRERFVVDKVFVGNINRETSRQEIEEIFSPYGHIEDVVILPNRGYCFVKFSSKEMALAAIKGLNRTFTMRGCDQPVIVRFAEPKKPKMGESRGNYLPANANYGPDSQEPAAWPLPNFCGPNTGGSIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHSHLASMPLRPIQAPTFPSQPFNTEVQRQFHPADLPVRNIEQQLSSQLPTQTERNNTVAGSTTSDLSTDPQDEDFPECDWSEHYCPDGNKYYYNCVTCESRWEKPEEYAFYDKESQKQHEQDDPSFLQPQLSLSSSQEVSQRQQETNHDHMESETSPVVEQV | 518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu07g04302 | 518 | SUPERFAMILY | WW domain | 435 | 466 | IPR036020 | GO:0005515 | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 50 | 94 | - | - | |
| Tsu07g04302 | 518 | Gene3D | - | 196 | 280 | IPR012677 | - | |
| Tsu07g04302 | 518 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 109 | 190 | IPR000504 | GO:0003723 | |
| Tsu07g04302 | 518 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 198 | 273 | IPR000504 | GO:0003723 | |
| Tsu07g04302 | 518 | SMART | ww_5 | 431 | 463 | IPR001202 | GO:0005515 | |
| Tsu07g04302 | 518 | PANTHER | RNA BINDING PROTEIN | 90 | 505 | - | - | |
| Tsu07g04302 | 518 | Gene3D | - | 417 | 481 | - | - | |
| Tsu07g04302 | 518 | Gene3D | - | 99 | 195 | IPR012677 | - | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 469 | 518 | - | - | |
| Tsu07g04302 | 518 | SMART | rrm1_1 | 110 | 186 | IPR000504 | GO:0003723 | |
| Tsu07g04302 | 518 | SMART | rrm1_1 | 199 | 269 | IPR000504 | GO:0003723 | |
| Tsu07g04302 | 518 | SUPERFAMILY | RNA-binding domain, RBD | 73 | 194 | IPR035979 | GO:0003676 | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
| Tsu07g04302 | 518 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 59 | 195 | - | - | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Tsu07g04302 | 518 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 436 | 463 | IPR001202 | GO:0005515 | |
| Tsu07g04302 | 518 | PANTHER | FLOWERING TIME CONTROL FCA-LIKE PROTEIN | 90 | 505 | - | - | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 402 | 434 | - | - | |
| Tsu07g04302 | 518 | CDD | WW | 434 | 463 | IPR001202 | GO:0005515 | |
| Tsu07g04302 | 518 | Pfam | WW domain | 434 | 461 | IPR001202 | GO:0005515 | |
| Tsu07g04302 | 518 | ProSitePatterns | WW/rsp5/WWP domain signature. | 436 | 461 | IPR001202 | GO:0005515 | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 402 | 425 | - | - | |
| Tsu07g04302 | 518 | SUPERFAMILY | RNA-binding domain, RBD | 199 | 289 | IPR035979 | GO:0003676 | |
| Tsu07g04302 | 518 | MobiDBLite | consensus disorder prediction | 478 | 498 | - | - | |
| Tsu07g04302 | 518 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 111 | 178 | IPR000504 | GO:0003723 | |
| Tsu07g04302 | 518 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 200 | 258 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu07g04302 | Tsu-Chr7 | 48423831 | 48430955 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu07g04302 | 111 | 351 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 23.194 | 1.22e-10 | 62.0 |