Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04297 ATGTCAAAAAGAAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCAATCAACATACAGTTTCGAACGATCTCAAGCTCCTCAACGTCTCTACGTTCCTCCTTCATCACGTAAAACCCACGACAACTACGAAGACAATGACCTCGATAACATCGAGTACGATGATGATGCCAACGAagaatcaaacaacaacaacaacgacGGTAACAGCAACACCGACAAAGGTGGTGATGGTGGTGAGGAAGAGGAAATCGATCCATTAGATGCTTTTATGGAAGGAATACATGAGGAGATGAAGGCGGCACCGCCTCCGAAGCCGAAGGAGAAAGTAGAAGATAGATATAAAGATGATGAAGAGGATCCTATGGAGAGTTTTTTGAGGGCGAAAAAGGATTTAGGGTTGACGTTGGCTTCGGATGCACTTCATGCTGGATATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAACCCTATTGTTCTTGATAAGAAGAAAATTGAACCTATAGCTCCTCTTGATCACACTGAAATTGATTATGAACCCTTTACTAAGGATTTTTACGAGGAGACACCTTCAATTTCAGGTATGAGTGAGCAAGATGTGACTGAATATAGGAAGAGTTTGGCTATTCGGGTATCGGGTTTTGATTGTCCTAAGCCAGTGAAAACATTTGAGGATTGTGGGTTTGCTTCGCAAATTATGTCTGCTATAAAAAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTGCCGGTTGTGCTTTCCGGTAGAGATATCATTGGCATTGCGAAAACTGGTTCTGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATTATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATTGGAGTTATATGTGCACCTACCAGGGAATTGGCACATCAGATATATCTTGAGGCGAAGAAATTTGCAAAAGCATATGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAATTCAAGGAACTGAAAGCAGGCTGTGAGATAGTTGTTGCTACACCGGGGAGATTGATAGACATGCTTAAAATGAAGGCATTGACAATGCAAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTCGATCTTGGATTTGAGCCACAAGTAAGGTCCATCGTTGGTCAGATTAGGCCGGACCGCCAAACTTTGCTCTTTTCTGCAACAATGCCTCGCAAAGTTGAGAAGTTAGCCAGGGAAATCCTTTCTGATCCTATTAGGGTGACCGTGGGAGAGGTGGGGACGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCGTCCGATTCTGAGAAGTTGCCGTGGCTTCTGGAGAAACTGCCCGAAACGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAATCACAATTGAGTCAGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCATCTACCACGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAAACCGTGGTAATCTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCCGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACGGAGTTGATGGATCTTGCTATGAAGGTAATGATGCCCGTATACAGTATTCTAGTTTCATCACGAGTATTGATGTTTGTGCAATTGATTTCATGCTTAAAGACTCCTGTATCCATGTAA 1944 0.4177 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRKTHDNYEDNDLDNIEYDDDANEESNNNNNDGNSNTDKGGDGGEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKVEDRYKDDEEDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFTKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDCPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMQRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGTANEDITQVVQVIPSDSEKLPWLLEKLPETIDQGDTLVFASKKATVDEIESQLSQRGFKVAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKTVVIFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKVMMPVYSILVSSRVLMFVQLISCLKTPVSM 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04297 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 612 IPR027417 -
Tsu07g04297 647 MobiDBLite consensus disorder prediction 13 32 - -
Tsu07g04297 647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 266 441 IPR014001 -
Tsu07g04297 647 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 617 - -
Tsu07g04297 647 CDD SF2_C_DEAD 453 585 - -
Tsu07g04297 647 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 387 395 IPR000629 -
Tsu07g04297 647 MobiDBLite consensus disorder prediction 1 83 - -
Tsu07g04297 647 SMART ultradead3 254 456 IPR014001 -
Tsu07g04297 647 SMART helicmild6 494 575 IPR001650 -
Tsu07g04297 647 Pfam DEAD/DEAH box helicase 259 430 IPR011545 GO:0003676|GO:0005524
Tsu07g04297 647 Pfam Helicase conserved C-terminal domain 468 575 IPR001650 -
Tsu07g04297 647 MobiDBLite consensus disorder prediction 47 61 - -
Tsu07g04297 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 444 IPR027417 -
Tsu07g04297 647 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 235 263 IPR014014 GO:0003724
Tsu07g04297 647 Gene3D - 198 442 IPR027417 -
Tsu07g04297 647 CDD DEADc_DDX42 246 442 - -
Tsu07g04297 647 Gene3D - 443 619 IPR027417 -
Tsu07g04297 647 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 466 615 IPR001650 -
Tsu07g04297 647 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04297 Tsu-Chr7 48371455 48374127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04297 235 591 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 1.86e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04297 K12835 - gmx:100805571 1051.58