Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04280 ATGGAAGAAATTGTCTTGCTAGTCGATGATTTGAGATTACTTTCAGGAATTTCTCGCTGTAGAATATGCCATGAAGAAGAATTTGAAAGCTCCAAAACCTTGGAAGCACCTTGTTCTTGTTCTGGAACCGTtaagtttgcTCATAGAGATTGCATACAAAGATGGTGTAACGAAAAAGGAAATACAACTTGTGAAATATGTCTCCAGcaaTATGAACCTGGATATACAACTCCTCCTCCTAAGAAATCTGAGATAAATGATGAAGCAATGTCTAATAGGGATGAGGAAGAAGGTTCAGACAGAAGAAGAGAAAATGTGGTGGAAGGAATTGTAATAGAAAGTGATTGTAGTTCTACAGCTGACAGAACCGCGTTTCACTGTCGATCACTTGCATTAGCTTTTACACTTGTGTTACTAGTAAGACATTGTTTGGTTGTTCCTATAAGTGGAGCGGAAGATTACCCATTTACACTTTTTACCGTCATCGTACTAAAGGCTTGTGGAATTATCATACCGATGTACATAGTTACCAAGACAATCGGAGTCATTCTGAATAGCATTCGGCGCTATAGAGGTTCTTACTACGACACATCATTTTCTGATGAAGATGGCAGAAATGAAGCATTACACGAAGAAAATGTAATATATTCGTAG 654 0.3731 MEEIVLLVDDLRLLSGISRCRICHEEEFESSKTLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTTPPPKKSEINDEAMSNRDEEEGSDRRRENVVEGIVIESDCSSTADRTAFHCRSLALAFTLVLLVRHCLVVPISGAEDYPFTLFTVIVLKACGIIIPMYIVTKTIGVILNSIRRYRGSYYDTSFSDEDGRNEALHEENVIYS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04280 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Tsu07g04280 217 MobiDBLite consensus disorder prediction 78 104 - -
Tsu07g04280 217 Pfam Protein of unknown function (DUF3675) 73 180 IPR022143 -
Tsu07g04280 217 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Tsu07g04280 217 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 203 - -
Tsu07g04280 217 CDD RING_CH-C4HC3_MARCH 20 67 - -
Tsu07g04280 217 SUPERFAMILY RING/U-box 19 72 - -
Tsu07g04280 217 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 203 IPR033275 -
Tsu07g04280 217 SMART ringv_2 19 68 IPR011016 GO:0008270
Tsu07g04280 217 MobiDBLite consensus disorder prediction 86 104 - -
Tsu07g04280 217 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Tsu07g04280 217 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04280 Tsu-Chr7 48265544 48267752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04280 20 67 C3H Transcription Factor Family AT2G37950 44.898 5.67e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04280 - - mtr:MTR_7g109460 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04280 07 48265544 48267752 Tsu01g03743 01 45161922 45164802 PCT