Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04271 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAAGGAAGATGGACTGCAGAAGAGGATGAAATTTTGACTCAATATGTTAAGACTAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTGCTTAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAACTATTTGAGAGATGATCTTAAAAGGGGAAATATTTCTGCTGAAGAGGAAAGTATCATTGTCAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATTGCAAGTCATTTACCAGGCAGAACAGACAACGAGATTAAAAACTACTGGAACTCTCACTTGAGTAGGAAAGTTTACAGCTTCAAAGGAACAGCTAATAATTCCAATAATACTAAAGAGATGCCCTTGCAACAAGGGAATGTAGTAAACACACCTCCCAAACGTAGAGGTGGTAGAACTAGCAGGTGGGCCATGAAGAAGAATAAACGCTATGCCCAATATATTTTCCAAACTCCAAAATCACAAAGAAGTGAACCTGCTGCAATTACACTTGAGAGTGACAAATTGTCTACAAGGGTAATAAAGGAATTCAAGGTTATGGACCCTGAAAATGGGCCGTCTTCTAATGGTGAAGATGGCCTAAGTGGATTACAGTTTCCGTGCATTGACGGTAAAAATATTGAAACCGATTGTGACCGCAAGTTGGGACCGTGTCCAAATGTCATTAATGATGGCGAGGTAGATTTTAATGATATTGTTATGGACACTTGCGAGGcggaagaagaaagaaaaagtaatGATGAAAATGTGGTTGTGATTAATGAAAGAGTGGGGGACAAAGGCACTAGCACAAAAGGAACAAAAGACCTAGAGAGTAATAGTAATAGCAATGTGGCTAATTATGGTTCTAATGATGAGTTGAATTTTTCTTCCATGGATTTgggtttggatgataatttggATTGGGAGAGTGTGATGCCATTGTTGAACCAGAAAGGACAATCACTGTCATGCGATCAAAGTGAAAACATGTTGACTTGGTTGTGGGATGATGATCAATGGGAAAAAGATTTTCAGAAATTTAGAGAGATTGAGCCTCAGAAACAAAATGTGGTTTCTTGGTTTTTGTCTTGA 1128 0.375 MGRAPCCEKVGLKKGRWTAEEDEILTQYVKTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDDLKRGNISAEEESIIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFKGTANNSNNTKEMPLQQGNVVNTPPKRRGGRTSRWAMKKNKRYAQYIFQTPKSQRSEPAAITLESDKLSTRVIKEFKVMDPENGPSSNGEDGLSGLQFPCIDGKNIETDCDRKLGPCPNVINDGEVDFNDIVMDTCEAEEERKSNDENVVVINERVGDKGTSTKGTKDLESNSNSNVANYGSNDELNFSSMDLGLDDNLDWESVMPLLNQKGQSLSCDQSENMLTWLWDDDQWEKDFQKFREIEPQKQNVVSWFLS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04271 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu07g04271 375 PANTHER MYB TRANSCRIPTION FACTOR 2 355 - -
Tsu07g04271 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g04271 375 Gene3D - 11 67 - -
Tsu07g04271 375 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g04271 375 CDD SANT 16 61 IPR001005 -
Tsu07g04271 375 MobiDBLite consensus disorder prediction 125 152 - -
Tsu07g04271 375 MobiDBLite consensus disorder prediction 125 142 - -
Tsu07g04271 375 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu07g04271 375 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g04271 375 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g04271 375 MobiDBLite consensus disorder prediction 285 300 - -
Tsu07g04271 375 CDD SANT 71 112 IPR001005 -
Tsu07g04271 375 Gene3D - 70 139 - -
Tsu07g04271 375 MobiDBLite consensus disorder prediction 275 300 - -
Tsu07g04271 375 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu07g04271 375 SMART sant 13 63 IPR001005 -
Tsu07g04271 375 SMART sant 66 114 IPR001005 -
Tsu07g04271 375 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04271 Tsu-Chr7 48168029 48172478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04271 1 176 MYB Transcription Factor Family AT5G49330 63.636 1.09e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g04271 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04271 K09422 - gmx:100793350 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04271 07 48168029 48172478 Tsu01g03752 01 45277659 45284876 PCT