Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04267 ATGTGCACCGTGCAATACTCTAGAAAAAGAAAAGCTTATCCAGAAACGCCGTTATTCTACGCCGGTCACAATTCACCGTCGCCTAACACTCGCCTCCGTCCGTTGTTCTGTCATCGCACCGGAACTTCCATACTGGACGACTTCTATTCTTCTTTAGttttttttatcatggaAGATTCTGAAGCCAAACCTGCTGAAAATAACCAACAAACTGAGCAAGTTTGTAGTTTTTTCCGAAAACCAGTTAATAAGAAGAACATAAGGAAGCGAACTATTGATAACGAAGATAATGAGGATGATTCGAATAATGAAGAGTCTTTGATGCATGTTCAGAAAAAGACTACGAAGACTGAGAATAAGTTGTTCTTTTCCTCCGGCCCTTCAAAAAGCTCTGCATCTACTGAACATAACGAAGAATCTCAGAAACACGGCTTTCATTTTGAGTCATCCAAAGTGATTCAAGTTCAACATGACAGCAAAGCAACAGCAACTCTAGAGACTGAGACCGATTTTTCAAATGATGCTCGTGCCAGGCGTGAAAGAGCTCTTAAGCAAGCATCAGAGACTCTTAAGGGAAAGGGAACTGGCTCCGAGGATGGAAAATTATACAAGGGAATGAATAATTACACAGATCATAAGGCTGGATTTCGGAGAGAGCACACAATTTCTGGTGAAAAGGCTGGTGGGTCGCACGGTCCTCTCAGGGCTTCGGCTCATATTAGAGTTTCAGCAAGGTTTGATTATCAGCCTGATATATGCAAAGATTACAAGGAAACCGGATACTGTGGATATGGCGATTCTTGTAAGTTTATGCATGATCGAGGCGATTATAAATCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGAAAGGAGGATGCGATTGGCTGCAGGTGAGGATGCCGAAGAGGAGGGTGCCAATTTGAACAATGAAGATGACAGCGACGATGACTCATTACCATTTGCATGTTTCATTTGTAGAAATCCATTCGTGGATCCTGTCTCAACGAAGTGCAAACACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACGCTTGAAGGGAAGAGTTTCTATGTATGGATGTTGCAGGTTATATGCCTCCTAGGCCTTCTTGTTCTGTGTCTATGGTTGTCCTTAAGACCGAATAACCCGTCCTTCTCCATTGTGTTGATCGCTATTGATCGACCTTCAAGTCAAAATGGCACAATATTTTACAGCCTTGAAATTGATAACCCAAACAAGGACTCGAGCATTTACTACGATGACATGATATTGAGTTTCCTCTATGGGCAGCAGGAAGATAAGGTGGGGGAGACAACCATAGGTTCATTTCATCAAGGAACTAGCAAGAACCGCATTGTATCTGACATTGTTAGTGCCAAACCTGGGCCATTCAAACCTCTCTTCAAAGCCATATCAAATGCAACCGCTGAGTTGAAGGCTTCCCTGACAACAAGATATCGATACAAGACATGGGGAATCAAGAGCAAGTTTCAGAGATTAGTCTTGAAAGGTATTCTGCCAATTGATTCTAATGGTAAGCTTTCACATAAGAAGAAGAAGTACCCACTTAACCGTAATTCCAAAAAACTGGGAAGGTCAAAGGCCAAAGTAAAGAAGCACTGA 1674 0.4217 MCTVQYSRKRKAYPETPLFYAGHNSPSPNTRLRPLFCHRTGTSILDDFYSSLVFFIMEDSEAKPAENNQQTEQVCSFFRKPVNKKNIRKRTIDNEDNEDDSNNEESLMHVQKKTTKTENKLFFSSGPSKSSASTEHNEESQKHGFHFESSKVIQVQHDSKATATLETETDFSNDARARRERALKQASETLKGKGTGSEDGKLYKGMNNYTDHKAGFRREHTISGEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKERRMRLAAGEDAEEEGANLNNEDDSDDDSLPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLEGKSFYVWMLQVICLLGLLVLCLWLSLRPNNPSFSIVLIAIDRPSSQNGTIFYSLEIDNPNKDSSIYYDDMILSFLYGQQEDKVGETTIGSFHQGTSKNRIVSDIVSAKPGPFKPLFKAISNATAELKASLTTRYRYKTWGIKSKFQRLVLKGILPIDSNGKLSHKKKKYPLNRNSKKLGRSKAKVKKH 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04267 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 380 IPR013083 -
Tsu07g04267 557 ProSiteProfiles Zinc finger RING-type profile. 326 364 IPR001841 -
Tsu07g04267 557 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Tsu07g04267 557 Pfam Late embryogenesis abundant protein 423 512 IPR004864 -
Tsu07g04267 557 ProSitePatterns Zinc finger RING-type signature. 341 350 IPR017907 -
Tsu07g04267 557 MobiDBLite consensus disorder prediction 297 318 - -
Tsu07g04267 557 MobiDBLite consensus disorder prediction 88 144 - -
Tsu07g04267 557 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Tsu07g04267 557 MobiDBLite consensus disorder prediction 117 134 - -
Tsu07g04267 557 SUPERFAMILY CCCH zinc finger 246 278 IPR036855 GO:0046872
Tsu07g04267 557 PANTHER ZINC FINGER PROTEIN 183 66 369 IPR039971 -
Tsu07g04267 557 CDD RING-HC_RNF113A_B 324 364 - -
Tsu07g04267 557 Pfam Zinc finger, C3HC4 type (RING finger) 325 366 - -
Tsu07g04267 557 SMART ring_2 326 363 IPR001841 -
Tsu07g04267 557 MobiDBLite consensus disorder prediction 533 557 - -
Tsu07g04267 557 Gene3D - 245 277 - -
Tsu07g04267 557 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 66 369 - -
Tsu07g04267 557 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 273 IPR000571 GO:0046872
Tsu07g04267 557 SUPERFAMILY RING/U-box 325 369 - -
Tsu07g04267 557 MobiDBLite consensus disorder prediction 185 204 - -
Tsu07g04267 557 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04267 Tsu-Chr7 48154585 48158550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04267 57 368 C2H2 Transcription Factor Family AT1G01350 67.628 9.27e-148 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu07g04267 LEA_2 3e-07 CL0159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04267 K13127 - gmx:100787434 494.197