Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04257 ATGAGTGAGCAGACGACTGGGATAGCTACCGGTGATAATGCTGCACTCGAATTAAACCATATTGACATACATGACAATGATTCTGGATCACAGGGAGCAGTTGTTCGACACAGTagcaagaagaaaaagaagggcCAACAACGGGTGTCTGATGGAGGAGATACAAGCAGAAGAGGGCTCCCCCAACTTAGCATGAAAGTGTTTGAAAAGATAGAAAGTAAgggaaaaacaactttcaatGAGGTGGCAGATGAACTTGTGGCTGAACTTTCTGATCCAAGGAATAGTGTGTCGTCCCCTGATAAGCAACAATATGATGAGAAAAACATCCGTCGAAGGACCTATGATGTTCTGAATGTTCTCATGGCAGTGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCATAGTCCTATCGAGAAGCTAAAGATGGAGCGTCTTGGGATCAGGAATAGAATTGAAAGGAAAGCATCGTATCTGCAGGAGCTTGAGGAACAATTTGTAGGTCTTAAGAACCTTGTTCAACGAAATGAGCAACTATATAGATCAGAAAATCCTCCCAGCGGAGGTGTATCTTTACCTTTTGTTCTGGTACAGACGGATCCTCACGCAACTGTTGAACTTGAAGTGGAAATATCAGAAGACAATCGAGATATGCAGTTTGTTCATTTTGATTTCAATAGTACTCCTTTTCAACTGTATGACGAAAATTATGTGCTCAAAGCAATGGAATTTTGTGATAGACCTCAGAGTGATATCGTTACGCTCAATGTTACGGAAGAAGGGGGAGGTTCTAGCTTGTCAGGCTTGCATCAGTTACAGAACAATACAATGGAGTCAAACAAAAGGTGCAAATGTGGTTCGAGTTTGACATTATCTGGTATTACTAATGCTACTTCTTCATCATTGCATTCACAAGTGTCCAGCAAAAATGTGTTTCAAAAACCTTTGCATGTTGGACCTGGTAAATATGTTCTCAAGCGCCCCAGAAGCCCACATAGAAGAGACGAAAATTCTTCAATGAATTTTAACATATCTAACAATAAGGAAATATATGTGGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCTGATAATAATTCTGTGTCCAGCAAAAATGTAATATATGTAGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCTGATAATAATTCTGTTGTTACCTCACAATACTGGGACATTGGAGAACCAACATGCATTTGTGAGTACTGTGGTGCAATGATGTGGTCTGAAGAAAGAGTGCAAAAGTCGTCTAAAGCAAAAAATCCAAAGTTTAATATGTGTTGCTTCCAGGGGAGGATTGTGATTCCTCATTACCATCCTCTTCCACAACCACTGAATGATTTGTTTCACAAACATGACAAGAGAAGCAAGTATTTTTTGGATAACATCAGATCATTCAATAGTATGTTTGCTTTCACATCTATGGGTGGGAAATTGAAGAACTCAATAAATGATGGAAAAGCTCCTCCTTCTTTTGTCATGAATGGTGAAAACTATCATCAAATCGGAAGTTTGCTTCCACATCAAGGAATTCAGCCCAAGTTTGctcaattatatatttatgacactgaaaatgaaataagtaaCAGAATGTCAGTTGTAAGTATGAAAGACAATAGCTCTTCACTGAAAGCAACAATTGTTGATGATATTAAGAAAGTTCTCGATAATCATAATCCATATGCTCAAACATATAGGATGATTCGTGACAAAATTTGTGAAAATGATGTTCCGACATTGAAGTTGAGAATATTAGGCAAGAGAGGACGTGATGGTAGGAGATACAATCTTCCAACAACATCAGAAGTTGCAGCTTTAGTTGTTGGTGATTTTGATGCATCTGACTTTGAGAGAGATATAATTTTGGAGACTCAGTCAGGTTTATTGAAACGTATCTCAACATTTGAACCTGCATATTTGCCATTACAATATCCCGTGCTCTTTCCTCGAGGAGAAGATGGATTTAGGAAGGACATCCAATACAATGATGATTCAAATGCACCTACAATAAAAAGACGAACCATTACTCTTCGAGAGTGGTTTGCTTATAGGATCCAGCAGAGGATTACTGAACAATCAACTTTATTGTTTTCTAGGCGTTTATTCCATCAGTTTCTGGTGGATGCTTATAGTATGATTGAGTCTGCACGGTTGAAATGGATTAGAAATCATCAAAAAGATTTGAGAGTTGAGATGTACAAGGGTCTTACTGAGGCAATTCTTAGAGGGGAGATTACTCCGTCAACAGCTGGCAAGAGAATTTTGTTGCCATCATCTTTTACCGGAGGAGCACGCTATATGTTTCAAAACTACCAGGATGCTTTGACAATATGTGGATGGACTGGACACCCTGATTTATTCATCACTTTTACTTGCAATCATAAGTGGCCAGAATTGTGTGGATTTTTGAGCAAATATAAACTAAAGTCAAAAGACCGACCAGATTTAGTTTGCAGACTTTTCAAAATTAAACTTGATCATTTGATAAAAGAGATAAAGAAAGGAGAAATTTTTGGCAAAGTTAACGCAGTGATATACACGATTGAATTTCAAAGGCGTGGACTACCGCATGCTCACATACTGGTATTTTTACACCCTGGTAGTAGGCATGTACATCCTCGAGATATAGACAAAATAATCTGTGCTGAGATTCCAGATAAATATAGTGATCCTAAACTATTTAATATAGTGGCTTCGCTTATGATTCATGGTCCATGTGgtgatcaaaataaaaactctCCATGCATGCAAAATGGAAAGTGTACCAAATATTTTCCTAAGAGGTTTGTTGACAACACAATTATTGACGCAGATGGATATCCAGTATACAGAAGGCGGGATAACGGTGTGTTTATTATAAAGGGTGAGTCTTTGGTTGATAACAGATTTGTAGTGCCATATAATAGACATCTGTTGTTGAAGTACAATTCTCATATTAATGTTGAATGGTGTAACCAGTCTCGATCCTTAAagtatttgtttaaatttgtcAACAAAGGGCATGATCGCGTCACTGCAGGCTTCTATAACAATGATTCTAAATATGATGACGAAATAAAGATGTATTATGATTGTAGATATTTGTCATCCTATGAAGCAGCTTGGAGAATTTTTACTTTTGACATTAACTATAAACAACCTTCAGTGGAGAGGTTAACCTTCCATTTGCCAGATGAACAACCGGTtgtttttgatgatgttgatcCAATTAATGAGGTTGTTAATAAGCCATTTATTCATAATACCAAGTTTCTGGCGTGGATGGATGCAAATAAGAAGTATGAGGAAGCTAAGAATCTTACTTACAGTCAATTTCCTCTGAAATTTGTTTGGAAAGAGTCTGAACGTCAATGGTATCCCCGAAAAAAAGGTCATAAAATTGGAAGACTTCATTTTCTACCACCTGGAATTGGTGAGATCTATTATCTCAGGACTTTGCTTAATTATGTTAAAGGACCTCAATCTTTTGCTGAAATAAGGACAGTGAACAATGTTCATTATCCAACGTTCAAGGAGGCTTGCTATGCGATGAGTTTGTTAGATGATGACAAAGAGTACATAGATGCCATTATGGAGGCAAGCCATTGGGGTACAGGAAGTAACTTACGGGAGCTATTTGCAAATTATTTGTTGTCAAATCAGTTATCCAGACCTGGATTTGTTTGGAACGAGACTTGGGAGTATTTGACTGATGACATATTGAGCACACAAAGAATGCTTCTTCAATTTCAAGATTTGGTTTTTTCTCCAACAGAGTTGAAGATGTTTGTGTTGTCAGAGATTGAAAAATTGCTACAAAGCAATAACAAGAGTCTGTCAGACTTTCCTACAATGCCTCAGCCAGACTTGTCAATGATTACTGCAAGACAAAATAGGCTCATATATGATGAGCTAAATTATGACAGACACTCTTTGGTTGAAGAATACACTCAATTGATGTCAACCATGACTTCAGAACAAAGGAGAATCTATGACAAGATAATGACACGAGTCACTGAAAATAAACCTggattgttttttctttatggtTATGGCGGCACAGGAAAGACTTATATTTGGAGGGCTATGTCAGCAGCTTTACGCTCAAAGGGAGATATTGTTCTAACAGTTGCATCTAGTGGAATAGCTGCTTTACTGATTCCTGGTGGAAGAACTGCTCATTCAAGGTTTTCCATTCCTATACAAGTTGATGAAAACTCAACTTGCAATATTAAGCAAGGAAGCCCCTTAGCAGAACTAATAGTCGAGGCAAAGCTCGTCATATGGGATGAAGCTCCAATGACACATAAACATTGTTTTGAAGCTGTTGATAGAACCTTCAGGGATATCCTTCGATTTTGTGATAGTAGAAACTTAAATCTTCCTTTTGGTGGAAAAGTTGTTGTCTTGGGAGGAGATTTTCGACAAATTTTGCCAGTTATACCAAAAGGAACAAGACAAGAAGTAGTTCATGCTACAATCAACTCCTCATATCTTTGGGATTTTTGTGAAGTGATGGCATTACATACAAACATGAGGCTACTAACTAGTAGTTTGGATTCTGATTTCAGCCAAAGAAAGGAGTTCTCTGATTGGCTCTTAGGAATTGGTGATGGTAATGTTGGGGAAGACAATGATGTGGATATAAGTGTTCAAATTCCCGATGATCTGCTTATAAAAAGCGCAGGTGACTCACTTGCATCCATTGTTTATAGCACATATCCTTCATTCTTAGATAGTATGAATGATCCTTCATTTTTTCAAGATAGGTCTATATTAGCTCCTAAGAATGACATTGTTGACAAGATCAATGATTACATGTTGTCATTAATTCCTGGCGATCAAAAAATATATCTTAGTTTTGATTCTCCATGCTCACTCAATTCAGATACTGACAATCCAGATAATGTGCACACTACAGAATTTTTTAACACAATTACCACTTTTGGACTTCCAAATCACATAGTGAAACTAAAAGTTGGAGTGCCAGTAATGTTATTGAGAAACATAAATCATTCTTCAGGATTATGCAATGGAACTCGACTAATCATTACAAGGATGGGAAAATATGTTCTTGAAGGGAATGTGATATCAGGAAGTAATCTTGGTCATAAGGTTTATATACCTAGATTATCTTTAACATCTGCTGATGTTAGAattcctttcaaatttcaaaggaAGCAATTTCCTTTGACTCTTTCATTTGCAATGACTATTAATAAAAGTCAAGGACAGTCGTTAAAGCATGTTGGGCTGTATCTTTCTCGCTCAGTTTTCTCACATGGTCAGCTATATGTGGCATTTTCAAGGaaatatttcaaaaattatcTTAACTGGTATGGATCTAACTGGGTTTCTCTGTTGCTGCTTACATGTCATTCATTTGACTATTATAAACTGAATGGTTGTATTGTTGCAGCTGCATTGTAG 5451 0.3616 MSEQTTGIATGDNAALELNHIDIHDNDSGSQGAVVRHSSKKKKKGQQRVSDGGDTSRRGLPQLSMKVFEKIESKGKTTFNEVADELVAELSDPRNSVSSPDKQQYDEKNIRRRTYDVLNVLMAVDIISKDKKEIQWKGLHSPIEKLKMERLGIRNRIERKASYLQELEEQFVGLKNLVQRNEQLYRSENPPSGGVSLPFVLVQTDPHATVELEVEISEDNRDMQFVHFDFNSTPFQLYDENYVLKAMEFCDRPQSDIVTLNVTEEGGGSSLSGLHQLQNNTMESNKRCKCGSSLTLSGITNATSSSLHSQVSSKNVFQKPLHVGPGKYVLKRPRSPHRRDENSSMNFNISNNKEIYVECNENGEEYDVPDNNSVSSKNVIYVECNENGEEYDVPDNNSVVTSQYWDIGEPTCICEYCGAMMWSEERVQKSSKAKNPKFNMCCFQGRIVIPHYHPLPQPLNDLFHKHDKRSKYFLDNIRSFNSMFAFTSMGGKLKNSINDGKAPPSFVMNGENYHQIGSLLPHQGIQPKFAQLYIYDTENEISNRMSVVSMKDNSSSLKATIVDDIKKVLDNHNPYAQTYRMIRDKICENDVPTLKLRILGKRGRDGRRYNLPTTSEVAALVVGDFDASDFERDIILETQSGLLKRISTFEPAYLPLQYPVLFPRGEDGFRKDIQYNDDSNAPTIKRRTITLREWFAYRIQQRITEQSTLLFSRRLFHQFLVDAYSMIESARLKWIRNHQKDLRVEMYKGLTEAILRGEITPSTAGKRILLPSSFTGGARYMFQNYQDALTICGWTGHPDLFITFTCNHKWPELCGFLSKYKLKSKDRPDLVCRLFKIKLDHLIKEIKKGEIFGKVNAVIYTIEFQRRGLPHAHILVFLHPGSRHVHPRDIDKIICAEIPDKYSDPKLFNIVASLMIHGPCGDQNKNSPCMQNGKCTKYFPKRFVDNTIIDADGYPVYRRRDNGVFIIKGESLVDNRFVVPYNRHLLLKYNSHINVEWCNQSRSLKYLFKFVNKGHDRVTAGFYNNDSKYDDEIKMYYDCRYLSSYEAAWRIFTFDINYKQPSVERLTFHLPDEQPVVFDDVDPINEVVNKPFIHNTKFLAWMDANKKYEEAKNLTYSQFPLKFVWKESERQWYPRKKGHKIGRLHFLPPGIGEIYYLRTLLNYVKGPQSFAEIRTVNNVHYPTFKEACYAMSLLDDDKEYIDAIMEASHWGTGSNLRELFANYLLSNQLSRPGFVWNETWEYLTDDILSTQRMLLQFQDLVFSPTELKMFVLSEIEKLLQSNNKSLSDFPTMPQPDLSMITARQNRLIYDELNYDRHSLVEEYTQLMSTMTSEQRRIYDKIMTRVTENKPGLFFLYGYGGTGKTYIWRAMSAALRSKGDIVLTVASSGIAALLIPGGRTAHSRFSIPIQVDENSTCNIKQGSPLAELIVEAKLVIWDEAPMTHKHCFEAVDRTFRDILRFCDSRNLNLPFGGKVVVLGGDFRQILPVIPKGTRQEVVHATINSSYLWDFCEVMALHTNMRLLTSSLDSDFSQRKEFSDWLLGIGDGNVGEDNDVDISVQIPDDLLIKSAGDSLASIVYSTYPSFLDSMNDPSFFQDRSILAPKNDIVDKINDYMLSLIPGDQKIYLSFDSPCSLNSDTDNPDNVHTTEFFNTITTFGLPNHIVKLKVGVPVMLLRNINHSSGLCNGTRLIITRMGKYVLEGNVISGSNLGHKVYIPRLSLTSADVRIPFKFQRKQFPLTLSFAMTINKSQGQSLKHVGLYLSRSVFSHGQLYVAFSRKYFKNYLNWYGSNWVSLLLLTCHSFDYYKLNGCIVAAAL 1816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04257 1816 MobiDBLite consensus disorder prediction 23 63 - -
Tsu07g04257 1816 PANTHER ATP-DEPENDENT DNA HELICASE 509 1787 - -
Tsu07g04257 1816 SUPERFAMILY "Winged helix" DNA-binding domain 58 140 IPR036390 -
Tsu07g04257 1816 SMART E2F_TDP_2 55 138 IPR003316 GO:0005667|GO:0006355
Tsu07g04257 1816 CDD DP_DD 143 247 IPR014889 -
Tsu07g04257 1816 Gene3D - 50 141 IPR036388 -
Tsu07g04257 1816 Pfam Helitron helicase-like domain at N-terminus 694 876 IPR025476 -
Tsu07g04257 1816 PANTHER UNCHARACTERIZED 509 1787 - -
Tsu07g04257 1816 SMART DP_2 141 305 IPR014889 -
Tsu07g04257 1816 Coils Coil 164 184 - -
Tsu07g04257 1816 Gene3D Transcription factor DP 142 265 IPR038168 -
Tsu07g04257 1816 CDD SF1_C_RecD 1740 1777 - -
Tsu07g04257 1816 Pfam E2F/DP family winged-helix DNA-binding domain 58 138 IPR003316 GO:0005667|GO:0006355
Tsu07g04257 1816 Pfam Transcription factor DP 143 254 IPR014889 -
Tsu07g04257 1816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1466 1786 IPR027417 -
Tsu07g04257 1816 Pfam PIF1-like helicase 1330 1693 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu07g04257 1816 Gene3D - 1327 1508 IPR027417 -
Tsu07g04257 1816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1518 IPR027417 -
Tsu07g04257 1816 SUPERFAMILY E2F-DP heterodimerization region 143 257 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04257 Tsu-Chr7 48043952 48054843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04257 42 248 E2F-DP Transcription Factor Family AT5G02470 44.340 1.01e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu07g04257 PIF1 2.6e-145 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04257 - - bvg:104885245 1624.37