Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04255 ATGGTCTCTCTCAAACTCCAAAAGCGTCTCGCTTCCAGCGTCCTCAAGTGCGGTAGAGGCAAAGTTTGGCTCGATCCAAATGAAGTCAATGAAATCTCCATGGCCAATTCTCgcCAAAACATTAGGAAGCTGGTTAAGGATGGGTTTATCATCAGAAAACCTACCAAGATCCATTCCCGTTCACGTGCTCGTCGTATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATatgGTAAGAGGAAGGGTACAAGGGAGGCAAGGCTTCCCACAAAGATCCTTTGGATGAGGAGAATGCGTGTGCTTAGACGCTTGCTCCGCAAGTACCGAGAGTCTAAAAAGATTGACAAGCACATGTATCATGACATGTATATGAAGGTTAAGGGTAACGTGTTCAAGAATAAGAGAGTTCTAATGGAGAGCATTCACAAATCTAAAGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAATTTGAGGCCAAGCGTGCCAAGAACAAAGCCAGCCGAGAAAGGAAGCATGCTCGGAGGGAGGAGCGTTTTGCTCAAGGTCCTGGAGGAGAGAAGCCAGCTGATGCTCCTGCTGCTGCACCTGTTGCAGCAGCACAGCCAACCCAAACATCAAAGAAATCGAAGAAGGCAGCTGCAGTCTGA 654 0.474 MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGGEKPADAPAAAPVAAAQPTQTSKKSKKAAAV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04255 217 PANTHER 60S RIBOSOMAL PROTEIN L19 1 213 IPR039547 GO:0003723|GO:0003735|GO:0022625
Tsu07g04255 217 MobiDBLite consensus disorder prediction 201 217 - -
Tsu07g04255 217 Gene3D - 57 185 - -
Tsu07g04255 217 MobiDBLite consensus disorder prediction 144 185 - -
Tsu07g04255 217 MobiDBLite consensus disorder prediction 144 217 - -
Tsu07g04255 217 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Tsu07g04255 217 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu07g04255 217 PANTHER RIBOSOMAL PROTEIN L19 1 213 - -
Tsu07g04255 217 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Tsu07g04255 217 MobiDBLite consensus disorder prediction 57 79 - -
Tsu07g04255 217 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Tsu07g04255 217 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Tsu07g04255 217 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu07g04255 217 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu07g04255 217 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04255 Tsu-Chr7 48030531 48032658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04255 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.977 3.68e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04255 K02885 - qsu:111984851 353.984